Job Description P0AGK1 Confidence 96.04% Date Thu Jan 5 11:29:22 GMT 2012 Rank 1 Aligned Residues 179 % Identity 16% Template c3ts7B_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of farnesyl diphosphate synthase (target efi-501951)2 from methylococcus capsulatus Resolution 1.94 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	L	L	V
Query Conservation
Alig confidence																																																	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		P	L	L	T	Y	A	T	G	Q	T	I	G	V	A	A	D	L	L	D	G	P	A	C	A	V	E	F	I	H	V	Y	S	L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	.	.	.	R	G	K	P	T	C	H	K	A	Y	D	E	A	T	A	I	L	A	G	D	G	L	Q	A	L	A	F	H	V	L
Template Known Secondary structure													T			G	G	G	T																			T	S	T	T	T	T			S	B	S	.	.	.	S	S	S	B						S
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		112	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	L	N	T	.	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	P	F	M	K	R	Y	T	H	L	P	Q	V	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S	C
Query Conservation							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	D	P	S	I	A	V	P	A	E	N	R	I	A	M	I	E	T	L	A	K	A	S	G	P	A	G	M	V	G	G	Q	A	I	D	L	A	S	V	G	K	K	L	D	L	P	G	L	E	N	M	H	I	R	K	T	G	A	L	I	R	A	S	V	R	L	A	C	L	A	R	P	G	L	P	A	E	Q	F
Template Known Secondary structure					T	T																				S	T	T	T										T	T	T	T																T														T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	M	F	L	A	N	I	L	W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	D	D	V	K	I	G	I	K	S	T	A	I	L	F	G	Q	Y	D	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	L	D	H	Y	A	K	C	I	G	L	A	F	Q	I	Q	D	D	I	L	D	E	E	S	D	T	Q	T	L	K	P	N	Y	P	A	L	L	G	L	S	G	A	K
Template Known Secondary structure																												T	S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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