Job Description P0AGK1 Confidence 5.07% Date Thu Jan 5 11:29:22 GMT 2012 Rank 30 Aligned Residues 157 % Identity 15% Template c3rmgB_ PDB info PDB header:transferase Chain: B: PDB Molecule:octaprenyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 bacteroides thetaiotaomicron Resolution 2.30 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	L	L	V
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	I	L	V	L	L	V	A	R	L	Y	G	A	V	T	P	A	T	L	H	A	A	V	S	L	E	L	L	H	T	A	S	L	V	H	D	D	V	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	N	N	K	V	S	V	L	A	G	D	Y	L	L	A	T	S	L	V	H	A
Template Known Secondary structure											T	T	S																								G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.																			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.														.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	P	F	M	K	R	Y	T	H	L	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	L	G	A	A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S	C	W	L	M	F	L	A	N	I	L
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																																																				.
Template Sequence		E	Q	T	N	N	Y	E	I	I	R	L	V	S	S	L	G	Q	K	L	A	E	G	E	L	L	Q	L	S	N	V	S	N	H	S	F	S	E	E	V	Y	F	D	V	I	R	K	K	T	A	A	L	F	A	A	C	A	E	A	A	A	L	S	V	Q	V	G	.	E	E	E	V	A	F	A	R	L	L	G	E	Y
Template Known Secondary structure			T	T	T																					T	T	T	T	T	T	T																T															T	T	T			.
Template Predicted Secondary structure																																																																				.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.									.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.
Query Sequence		W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	.	.	.	.	.	.	.	.	D	D	V	K	I	G	I	K	S	T	A	I	L	F
Query Conservation																	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	I	C	F	Q	I	K	D	D	I	F	D	Y	F	D	S	K	G	K	P	T	G	N	D	M	L	E	G	K	L	T	L	P	A	L	Y
Template Known Secondary structure														T	T	S							T	T	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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