Job Description P0AGK1 Confidence 5.45% Date Thu Jan 5 11:29:22 GMT 2012 Rank 26 Aligned Residues 186 % Identity 16% Template c3lomA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of geranyltransferase from legionella2 pneumophila Resolution 2.30 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	.	L	L
Query Conservation																																																																															.
Alig confidence																																																	.	.	.																												.
Template Conservation																																																	.	.	.
Template Sequence		P	I	L	V	Y	L	A	G	D	L	I	D	V	D	Q	G	V	L	D	I	I	A	A	A	L	E	L	T	H	C	Y	S	L	I	H	D	D	L	P	A	M	D	N	D	D	L	R	.	.	.	R	G	K	P	S	C	H	K	A	F	D	E	A	T	A	I	L	V	G	D	G	M	Q	A	L	A	I	E	V	L
Template Known Secondary structure												T	T																										S	T	T	T	T			S			.	.	.	T	T								S
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	P	F	M	K	R	Y	T	H	L	P	Q	V	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	R	L	S	P	L	L	P	A	A	Q	V	V	A	I	T	Q	V	L	V	N	A	S	G	I	S	G	M	V	S	G	Q	S	L	D	L	S	E	L	A	K	S	S	V	T	E	E	Q	L	R	E	I	H	L	L	K	T	G	K	L	I	L	A	C	F	E	M	V	L	A	A	Q	H	E	V	S	E	Q	I
Template Known Secondary structure						T	T	T	S																	S	T	T	T											T	T	T	S	S															T													T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	W	L	M	F	L	A	N	I	L	W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	D	D	V	K	I	G	I	K	S	T	A	I	L	F	G	Q	Y	D	K	L	I	I	G	I	L	Q	I	G	V	L	A
Query Conservation
Alig confidence																													.	.	.	.
Template Conservation																													.	.	.	.
Template Sequence		K	S	A	L	R	T	Y	G	K	H	I	G	L	V	F	Q	M	Q	D	D	Y	L	D	L	Y	A	P	.	.	.	.	K	T	T	F	A	T	L	F	N	K	Q	Q	L	E	E	E	I	A	V	H	Y	Q	I	A	M
Template Known Secondary structure																													.	.	.	.								S
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions