Job Description P0AGK1 Confidence 38.29% Date Thu Jan 5 11:29:22 GMT 2012 Rank 12 Aligned Residues 162 % Identity 14% Template c3llwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase (ispa); PDBTitle: crystal structure of geranyltransferase from helicobacter2 pylori 26695 Resolution 2.30 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	L	L	V	L	T	L	N	T	M	T	I	L	L	S	I	A
Query Conservation
Alig confidence																																				.	.	.
Template Conservation																																				.	.	.
Template Sequence		Q	Q	T	E	Y	F	K	I	A	L	S	I	E	C	L	H	T	Y	S	L	I	H	D	D	L	P	C	M	D	N	A	A	L	R	.	.	.	R	N	H	P	T	L	H	A	K	Y	D	E	T	T	A	V	L	I	G	D	A	L	N	T	Y	S	F	E	L	L	S	N	A	L	L	E	S	H	I	I	V	E	L
Template Known Secondary structure		S																							T	S	T	T	T	T			S			.	.	.	T	T								T																							S		S
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.																				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	A	L	A	W	V	Y	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	R	Y	T	H	L	P	Q	V	V	L	G	A	A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S	C	W	L	M	F	L	A	N	I	L	W	A	V	A	Y	D	T
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	I	L	S	A	N	G	G	I	K	G	M	I	L	G	Q	A	L	D	C	Y	F	E	N	T	P	L	N	L	E	Q	L	T	F	L	H	E	H	K	T	A	K	L	I	S	A	S	L	I	M	G	L	V	A	S	G	I	K	D	E	E	L	F	K	W	L	Q	A	F	G	L	K	M	G	L	C	F	Q	V
Template Known Secondary structure										S	T	T	T											T	T	T	S															T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	A	M	V	D	R	D	D	D	V	K	I	G	I	K	S	T	A	I	L	F	G	Q	Y	D	K	L
Query Conservation
Alig confidence							.	.	.	.
Template Conservation							.	.	.	.
Template Sequence		L	D	D	I	I	.	.	.	.	D	V	T	Q	A	K	N	S	F	V	N	L	L	G	L	E	R	A	N
Template Known Secondary structure							.	.	.	.							S
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		227	.	.	230	.					.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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