Job Description P0AGK1 Confidence 5.04% Date Thu Jan 5 11:29:22 GMT 2012 Rank 31 Aligned Residues 152 % Identity 12% Template c3ipiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of a geranyltranstransferase from the2 methanosarcina mazei Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	L	L	V	L	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V
Query Conservation
Alig confidence																						.						.	.	.	.
Template Conservation																						.						.	.	.	.
Template Sequence		A	A	L	A	V	E	X	X	H	S	A	S	L	I	H	D	D	L	L	D	.	Q	G	L	V	R	.	.	.	.	R	N	L	P	S	A	P	E	K	F	G	P	S	G	A	L	L	C	G	D	Y	L	I	A	K	S	I	A	F	I	S	P	Y	G	E	K	V	I	Q	D	F	G	K	A	G	X	D	X	A	E
Template Known Secondary structure																						.			T	S		.	.	.	.	T	T	S						S	S																					G	G	G
Template Predicted Secondary structure																						.						.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		132	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		Y	P	F	.	.	.	.	M	K	R	Y	T	H	L	P	Q	V	V	L	G	A	A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S	C	W	L	M	F	L	A	N	I	L	W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	D	D	V	K	I	G	I	K	S	T	A	I	L	F
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.																															.																																			.	.
Template Conservation																																							.																																			.	.
Template Sequence		G	E	V	L	D	L	K	E	N	D	Y	F	K	C	I	Y	K	K	T	A	S	L	F	A	I	S	A	S	I	G	A	Y	T	G	G	A	E	.	E	E	L	A	E	R	F	S	H	F	G	N	A	L	G	T	A	Y	Q	I	V	D	D	I	L	E	F	L	E	V	V	E	G	E	.	.	T	L	P	H	I	Y
Template Known Secondary structure																				T															T	T			.																																			.	.
Template Predicted Secondary structure																																							.																																			.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.
		208	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	K	S	T
Template Known Secondary structure		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions