Job Description P0AGK1 Confidence 4.04% Date Thu Jan 5 11:29:22 GMT 2012 Rank 39 Aligned Residues 183 % Identity 14% Template c3aq0G_ PDB info PDB header:transferase Chain: G: PDB Molecule:geranyl diphosphate synthase; PDBTitle: ligand-bound form of arabidopsis medium/long-chain length prenyl2 pyrophosphate synthase (surface polar residue mutant) Resolution 2.65 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	S	L	T	Q	N	K	L	L	A	F	H	R	L	M	R	T	D	K	P	I	G	A	L	L	L	L	W	P	T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T
Query Conservation
Alig confidence																													.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	P	K	L	A	S	A	A	E	Y	F	F	K	R	G	V	Q	G	K	Q	F	R	S	T	I	L	.	.	.	.	L	L	M	A	T	A	L	D	V	T	S	E	L	R	V	R	Q	R	G	I	A	E	I	T	E	M	I	H	V	A	S	L	L	H	D	D	V	L	V	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	S											S	S	S	S											.	.	.	.						T	S				T	T	T																											.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.														.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	L	L	V	L	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	M	K	R	Y	T	H	L	P	Q	V	V	L	G	A
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	V	M	G	N	K	M	S	V	L	A	G	D	F	L	L	S	R	A	C	G	A	L	A	A	L	K	N	T	E	V	V	A	L	L	A	T	A	V	E	H	L	V	T	G	E	T	M	E	I	T	S	S	T	A	A	R	Y	S	M	D	Y	Y	M	Q	K	T	Y	Y	K	T	A	S
Template Known Secondary structure		.	.	.	.	.	.	.	.				T	T																				T	T																								S							T														T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.												.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S	C	W	L	M	F	L	A	N	I	L	W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	.	.	.	.	.	.	.	.	.	.	.	D	D	V	K	I	G	I	K	S	T	A	I	L	F
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		L	I	S	N	S	C	K	A	V	A	V	L	T	G	Q	T	.	A	E	V	A	V	L	A	F	E	Y	G	R	N	L	G	L	A	F	Q	L	I	D	D	I	L	D	F	T	G	T	S	A	S	L	G	K	G	S	L	S	D	I	R	H	G	V	I	T	A	P	I	L	F
Template Known Secondary structure														T	T			.																															S	S	S		S	S								T	T
Template Predicted Secondary structure																		.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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