Job Description P0AGK1 Confidence 28.76% Date Thu Jan 5 11:29:22 GMT 2012 Rank 14 Aligned Residues 176 % Identity 11% Template c2j1pB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba in2 complex with ggpp Resolution 1.8 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	L	L	V
Query Conservation
Alig confidence																																																	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		P	V	L	C	I	A	A	C	E	L	V	G	G	E	E	S	L	A	X	P	A	A	C	A	V	E	X	I	H	T	X	S	L	I	H	D	D	L	P	C	X	D	N	D	D	L	R	.	.	.	R	G	K	P	T	N	H	K	V	Y	G	E	D	V	A	V	L	A	G	D	A	L	L	S	F	A	F	E	H	L
Template Known Secondary structure												T	T																										S	T	T	T	T			S			.	.	.	T	T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		112		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure			.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	.	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	P	F	M	K	R	Y	T	H	L	P	Q	V	V	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L
Query Conservation			.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	A	T	S	S	E	V	S	P	A	R	V	V	R	A	V	G	E	L	A	K	A	I	G	T	E	G	L	V	A	G	Q	V	V	D	I	S	S	E	G	L	D	L	N	N	V	G	L	E	H	L	K	F	I	H	L	H	K	T	A	A	L	L	E	A	S	A	V	L	G	G	I	I	G	G	G	S	D	E
Template Known Secondary structure					S		T	T	S																	S	T	T	T														T	T		S	S	S	S												T															T	T
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	C	W	L	M	F	L	A	N	I	L	W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	D	D	V	K	I	G	I	K	S	T	A	I	L	F	G	Q	Y	D	K	L
Query Conservation
Alig confidence																														.	.	.
Template Conservation																														.	.	.
Template Sequence		E	I	E	R	L	R	K	F	A	R	C	I	G	L	L	F	Q	V	V	D	D	I	L	D	V	T	K	S	.	.	.	S	K	L	T	Y	P	K	L	X	G	L	E	K	S	R
Template Known Secondary structure																														.	.	.
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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