Job Description P0AGK1 Confidence 1.99% Date Thu Jan 5 11:29:22 GMT 2012 Rank 70 Aligned Residues 207 % Identity 14% Template c2f94F_ PDB info PDB header:transferase Chain: F: PDB Molecule:farnesyl diphosphate synthase; PDBTitle: crystal structure of human fpps in complex with ibandronate Resolution 1.94 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.					.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		M	E	W	S	L	T	Q	N	K	L	L	A	F	H	R	L	M	R	.	.	.	.	T	D	K	P	I	G	A	L	L	L	L	W	P	T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.
Template Conservation
Template Sequence		M	G	H	P	E	I	G	D	A	I	A	R	L	K	E	V	L	E	Y	N	A	I	G	G	K	Y	N	R	G	L	T	V	V	V	A	F	R	E	L	V	E	P	R	K	Q	D	A	D	S	L	Q	R	A	W	T	V	G	W	C	V	E	L	L	Q	A	F	F	L	V	A	D	D	I	M	D	S	S	L	T	R
Template Known Secondary structure		T	T		G	G	G															S	S	S	S																S		G	G	G																															T	T
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110										.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.											.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	L	L	.	.	.	.	.	.	.	.	.	V	L	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	P	F	M	.	.	.	.	.	.	.	.	.	.	K	R
Query Conservation																																				.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	Q	I	C	W	Y	Q	K	P	G	V	G	L	D	A	I	N	D	A	N	L	L	E	A	C	I	Y	R	L	L	K	L	Y	C	R	E	Q	P	Y	Y	L	N	L	I	E	L	F	L	Q	S	S	Y	Q	T	E	I	G	Q	T	L	D	L	L	T	A	P	Q	G	N	V	D	L	V	R	F	T	E	K	R
Template Known Secondary structure		T	T				G	G	G	S	T	T	T	G	G	G																					T	T	S	T	T																												T	T	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		138	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.											.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure														.																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	T	H	L	P	Q	V	V	L	G	A	A	.	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S	C	W	L	M	F	L	A	N	I	L	W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	D	.	.	.	.	.	.	.	.	.	.	D	V	K	I	G	I	K	S	T	A	I	L
Query Conservation														.																																														.	.	.	.	.	.	.	.	.	.
Alig confidence														.																																														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	K	S	I	V	K	Y	K	T	A	F	Y	S	F	Y	L	P	I	A	A	A	M	Y	M	A	G	I	D	G	E	K	E	H	A	N	A	K	K	I	L	L	E	M	G	E	F	F	Q	I	Q	D	D	Y	L	D	L	F	G	D	P	S	V	T	G	K	I	G	T	D	I	Q	D	N	K	C	S	W	L	V	V
Template Known Secondary structure										T					T											T	T																																S						S	S				T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		207
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		273

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions