Job Description P0AGK1 Confidence 3.66% Date Thu Jan 5 11:29:22 GMT 2012 Rank 42 Aligned Residues 168 % Identity 11% Template c2azjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: crystal structure for the mutant d81c of sulfolobus2 solfataricus hexaprenyl pyrophosphate synthase Resolution 2.40 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	L	L	V
Query Conservation
Alig confidence																																										.	.	.						.	.
Template Conservation																																										.	.	.						.	.
Template Sequence		G	T	L	N	M	F	F	T	V	A	L	G	G	D	I	K	D	S	Y	G	G	A	L	A	I	E	I	L	H	S	A	S	L	A	L	C	D	I	V	D	.	.	.	L	D	A	T	R	.	.	R	G	D	K	A	A	W	V	V	Y	G	N	R	K	V	I	F	I	T	N	Y	L	I	P	T	A	L	R	I	I
Template Known Secondary structure											T	T	T			S	G	G	G																							.	.	.			S		S	.	.		S
Template Predicted Secondary structure																																										.	.	.						.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence		L	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	.	.	.	.	.	.	P	F	M	K	R	Y	T	H	L	P	Q	V	V	L	G	A	A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S	C	W	L	M	F	L	A	N	I	L	W	A	V	A	Y	D	T
Query Conservation																							.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																								.	.
Template Conservation																																																																				.	.
Template Sequence		Q	T	S	Y	G	D	D	A	L	N	T	S	I	E	L	W	K	D	T	S	V	G	A	L	R	D	M	Y	D	N	S	D	Y	I	R	T	I	E	L	K	T	G	S	L	F	K	L	S	T	V	L	S	A	Y	A	S	K	H	Y	N	T	K	Q	Q	M	L	.	.	D	V	G	K	Y	L	G	I	I	Y	Q	V
Template Known Secondary structure																													S	S												T															T	T		G	G	G						.	.
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.																.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Y	A	M	V	D	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	V	K	I	G	I	K	S	T	A	I	L
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	D	F	V	D	Y	K	T	K	K	V	E	E	I	D	G	S	A	K	Q	L	F	K	Y	Y	R	E	G	K	L	E	E	Y	V	R
Template Known Secondary structure							T	T	T	S	S		S	S				S					T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions