Job Description P0AGK1 Confidence 13.71% Date Thu Jan 5 11:29:22 GMT 2012 Rank 19 Aligned Residues 171 % Identity 12% Template c1wy0A_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthetase from2 pyrococcus horikoshii ot3 Resolution 2.20 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																	.	.	.	.	.																										.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		P	F	V	V	L	T	S	T	E	A	V	G	G	D	P	L	R	A	I	Y	P	A	V	A	I	E	L	I	H	N	Y	S	L	V	H	D	D	I	M	D	M	D	E	T	R	R	G	.	.	.	.	.	K	P	T	V	H	R	I	W	G	V	N	M	A	I	L	A	G	D	L	L	F	S	K	A	F	E	A	V
Template Known Secondary structure									T	T	T	T	T	S		G	G	G	G																							T				S	T	T	.	.	.	.	.	S
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
														109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	L	V	L	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	P	F	M	K	R	Y	T	H	L	P	Q	V	V	L	G	A	A	F	G	W	S	I	P	M	A	.	.	F	A	A	V	S	E	S	V	P	L	S	C	W	L	M	F	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Conservation
Template Sequence		A	R	A	E	I	P	P	E	K	K	A	R	V	L	E	V	I	V	K	A	S	N	E	L	C	E	G	Q	A	R	D	L	E	F	E	K	K	S	T	V	T	I	E	E	Y	M	E	M	I	S	G	K	T	G	A	L	F	E	A	S	A	K	V	G	G	I	I	G	T	D	N	E	E	Y	I	K	A	L	S	S
Template Known Secondary structure			T			S																														T	T		S															T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.												.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	I	L	W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	.	.	.	.	.	.	.	.	.	.	.	D	D	V	K	I	G	I	K	S	T	A	I	L	F
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	G	R	N	V	G	I	A	F	Q	I	W	D	D	V	L	D	L	I	A	D	E	K	K	L	G	K	P	V	G	S	D	I	R	K	G	K	K	T	L	I	V	A	H
Template Known Secondary structure																					S						T	S		S							T
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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