Job Description P0AGK1 Confidence 17.55% Date Thu Jan 5 11:29:22 GMT 2012 Rank 18 Aligned Residues 169 % Identity 13% Template c1wmwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl diphosphate synthetase; PDBTitle: crystal structure of geranulgeranyl diphosphate synthase from thermus2 thermophilus Resolution 1.55 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		T	L	W	A	L	W	V	A	T	P	G	V	P	Q	L	W	I	L	A	V	F	V	A	G	V	W	L	M	R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A	R	A	L	F	V	V	L	V	L	I	S	F	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																	.	.	.	.	.																										.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		G	L	L	T	V	Y	S	A	L	A	H	G	A	P	L	E	A	G	L	E	A	A	T	A	L	E	L	F	Q	N	W	V	L	V	H	D	D	I	E	D	G	S	E	E	R	R	G	.	.	.	.	.	R	P	A	L	H	R	L	H	P	M	P	L	A	L	N	A	G	D	A	M	H	A	E	M	W	G	L	L
Template Known Secondary structure												T	T																													T					T	T	.	.	.	.	.								S
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
														109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.						.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	L	V	L	T	L	N	T	M	T	I	L	L	S	I	A	A	L	A	L	A	W	V	Y	P	.	.	.	.	.	F	M	K	R	Y	T	H	L	P	Q	V	V	L	G	A	A	F	G	W	S	I	P	M	A	F	A	A	V	S	E	S	V	P	L	S	C	W	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.																																					.	.
Template Conservation																																																																																.	.
Template Sequence		A	E	G	L	A	R	G	L	F	P	P	E	V	L	L	E	F	H	E	V	V	R	R	T	A	Y	G	Q	H	L	D	L	L	W	T	L	G	G	T	F	D	L	R	P	E	D	Y	F	R	M	V	A	H	K	A	A	Y	Y	T	A	V	A	P	L	R	L	G	A	L	L	A	G	K	T	P	P	A	A	.	.
Template Known Secondary structure							T	T	S	S																												S	S	S																T																T	T							.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.											.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	L	A	N	I	L	W	A	V	A	Y	D	T	Q	Y	A	M	V	D	R	D	.	.	.	.	.	.	.	.	.	.	D	D	V	K	I	G	I	K	S	T	A	I	L	F
Query Conservation																								.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	E	E	G	G	L	R	L	G	T	A	F	Q	I	V	D	D	V	L	N	L	E	G	G	E	A	Y	G	K	E	R	A	G	D	L	Y	E	G	K	R	T	L	I	L	L	R
Template Known Secondary structure																							S		S				S	S	S	T	T						T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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