Job Description P0AGK1 Confidence 1.76% Date Thu Jan 5 11:29:22 GMT 2012 Rank 78 Aligned Residues 36 % Identity 17% Template c1l6nA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		R	A	A	G	C	V	V	N	D	Y	A	D	R	K	F	.	.	.	D	G	H	V	K	R	T	A	N	R	P	L	P	S	G	A	V	T	E	K	E	A
Query Conservation																	.	.	.
Alig confidence																	.	.	.						.
Template Conservation																									.
Template Sequence		Q	A	A	M	Q	M	L	K	E	T	I	N	E	E	A	A	E	W	D	R	L	H	P	.	V	H	A	G	P	I	A	P	G	Q	M	R	E	P	R	G
Template Known Secondary structure																							S		.					S			S	S
Template Predicted Secondary structure																									.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions