Job Description P0A825 Confidence 99.97% Date Thu Jan 5 11:06:42 GMT 2012 Rank 99 Aligned Residues 339 % Identity 18% Template d2v1pa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases Beta-eliminating lyases Resolution 1.9

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	E	N	Y	T	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	A	D	Y	A	N	V	Q	P	H	S	G	S	Q	A	N	F	A	V	Y	T	A	L	L	E	P	G
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.															.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.															.
Template Sequence		S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	.	.	.	.	.	.	.	.	.	.	.	M	R	G	D	E	A	F	S	G	S	R	S	Y	Y	A	.	.	.	.	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	.	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R
Template Known Secondary structure		T	T		S										T	.	.	.	.	.	.	.	.	.	.	.	T	S					S	S	S							.	.	.	.									T			S			.					S	S	T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.															.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.												.	.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.							.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.									.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.																							.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence													.	.	.	.	.	.																							.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		D	T	V	L	G	M	N	L	A	H	G	.	.	.	.	.	.	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	.	.	.	.	.	.	.	.	I	D	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	.	.	.	.	H	K	P	K	M	I	I	G	G	F	S
Query Conservation													.	.	.	.	.	.																							.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence													.	.	.	.	.	.																							.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S
Template Known Secondary structure									T	T	T						S	S												T	T							B		T	T	T	T		T	T	S			T	T	T	T		B														G	G	G								S	S	B
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		176	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.															.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Y	S	.	.	.	.	.	G	V	V	D	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	H	A	H	V	V	T	T	T	T	H	K	T	L	A	G	P	R	G
Query Conservation					.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G
Template Known Secondary structure			G	G	G		B																	T	T								T	T													G	G	G	T	T	S										G	G	G		S						S	S	S	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		G	L	I	L	A	K	G	G	S	.	.	.	.	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E	R	G	Y	K	V	V	S	G
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.																																					.	.	.
Template Conservation																																																			.	.	.
Template Sequence		G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	.	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	Q	Q	A	G
Template Known Secondary structure								S	G	G	G													T	T	S	S																					T	T		.	.	.																					T	T
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		313	.	.	.	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.								.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Query Sequence		G	T	D	N	H	L	F	L	V	D	.	.	.	.	.	.	.	.	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	.	.	.	.	.	.	.	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A
Query Conservation												.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Alig confidence		.	.	.								.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.										.	.	.
Template Conservation		.	.	.																																																																				.	.	.
Template Sequence		.	.	.	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	.	.	.	R	A	T	Y	T	Q	T
Template Known Secondary structure		.	.	.	S	S										S	T	T	S		G	G	G																						S						B		T	T	T		S	B				S										.	.	.	T	T	T
Template Predicted Secondary structure		.	.	.																																																																				.	.	.
Template SS confidence
					357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.				.	.	.	.	.	.	430
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	K	E	L	A	G	W	M	C	D	V	L	D	S	I	N	D	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	M	D	F	I	I	E	A	F	K	H	V	K	E	N	A	A	N	I	K
Template Known Secondary structure																T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions