Return to main results Retrieve Phyre Job Id

Job DescriptionP0A825
Confidence99.98%DateThu Jan 5 11:06:42 GMT 2012
Rank43Aligned Residues353
% Identity16%Templated1wyua1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P)
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30.........40......... 50.........60.........70.........80.........90
Predicted Secondary structure 











..
















Query SS confidence 




































. .








































Query Sequence  AELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGS. . QLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY
Query Conservation 

          
    
 
    
  

 
  
   ..     
           
               
 
 
   
Alig confidence 




















.














..












.....






















Template Conservation                      
.      
                       .....  
           
  
 
   
Template Sequence  EELRRLAAQNLPAHKAFLGGG. VRSHHVPPVVQALAARGEFLTAYTPYQPEV. . . . . SQGVLQATFEYQTMIAELAGLEI
Template Known Secondary structure  TS


TT



SS.






TS

S

SGGG.....
TSS
Template Predicted Secondary structure 












.











.....



Template SS confidence 















































































   52.......60.........70.. .......80.........90.........100.. .......110.........120.....
 
   91........100.. ....... 110.........120.........130. ........140.........150.........160.......
Predicted Secondary structure 

.
.














.


















Query SS confidence 











.






.





















.



































Query Sequence  ANVQPHSGSQAN. FAVYTAL. LEPGDTVLGMNLAHGGHLTHGS. PVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKP
Query Conservation    
   


 
 .   
 

.  


 
           
   .     
                
 
 
         
Alig confidence 











.






.





















.














...






....






Template Conservation         
  
   
 
 
        


    
 
            
  
  
   ...       ....

   
 
Template Sequence  ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE. . . GGRTPLP. . . . EVGEEVG
Template Known Secondary structure 
S
BSST

TTS
TT


B...TTB



....


TT
Template Predicted Secondary structure 



















...
....



Template SS confidence 















































































   126...130.........140.........150.........160.........170.........180.... .....190. .......
 
   168.170.........180.........190.........200......... 210.........220.........230.........240.....
Predicted Secondary structure 


















..


























Query SS confidence 









































. .



































Query Sequence  KMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVA. . AGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGS
Query Conservation   

    
  
   

  
  

   
  



 
   
   ..           
    
  
 
 
  

 
      
Alig confidence 









































..



































Template Conservation   
     
  
 
  
  
 


   
  



                      
       
  
 
  
 
      
Template Sequence  AVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAF
Template Known Secondary structure  SS
TTSB


TT


TTGGGTS

T
S
TTTT


GGG
S


GGG
Template Predicted Secondary structure 






































Template SS confidence 















































































   199200.........210.........220.........230.........240.........250.........260.........270........
 
   246...250.........260 .........270.........280.........290.........300
Predicted Secondary structure 



.........................









Query SS confidence 














. . . . . . . . . . . . . . . . . . . . . . . . .







































Query Sequence  EELYKKLNSAVFPGG. . . . . . . . . . . . . . . . . . . . . . . . . QGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE
Query Conservation                 .........................         

                          
  
Alig confidence 














.........................







































Template Conservation                                                  
  
   
   
  

          
  
  
Template Sequence  VRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHA
Template Known Secondary structure  GGG

S


TTS


GGGSGGGSS



S

Template Predicted Secondary structure 


































Template SS confidence 















































































   279280.........290.........300.........310.........320.........330.........340.........350........
 
   301.... ....310.........320.........330.........340.........350.........360.........370.........
Predicted Secondary structure 
.







































Query SS confidence 




.









































































Query Sequence  VFLER. GYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEA
Query Conservation   
   .
  
                           
   

 
     
           


     
  
    

Alig confidence 




.

















...





























.....









....



Template Conservation   
    
                 ...      
   
   

              .....


      
.... 


Template Sequence  LLLEVPGVRPFTPKPFFNEFALAL. . . PKDPEAVRRALAERGFHGATPVPREYGENL. . . . . ALFAATELHE. . . . EEDL
Template Known Secondary structure  TTSTT

S
SSB
S
...SS
TT





TTS
SS.....

TT

....
Template Predicted Secondary structure 










...














.....





....
Template SS confidence 















































































   359360.........370.........380.. .......390.........400.........410.. .......420.. ....
 
   380.........390
Predicted Secondary structure 
Query SS confidence 










Query Sequence  KELAGWMCDVL
Query Conservation     
  
   
Alig confidence 










Template Conservation 
  
 

 


Template Sequence  LALREALKEVL
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 










   427..430.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions