Job Description P0A825 Confidence 99.96% Date Thu Jan 5 11:06:42 GMT 2012 Rank 108 Aligned Residues 353 % Identity 16% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.					.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.								.	.	.	.			.	.	.
Query SS confidence																						.	.	.	.	.								.	.	.	.			.	.	.
Query Sequence		A	D	Y	D	A	E	L	W	Q	A	M	E	Q	E	K	V	R	Q	E	E	.	.	.	.	.	H	I	E	L	I	A	S	.	.	.	.	E	N	.	.	.	Y	T	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q
Query Conservation																						.	.	.	.	.								.	.	.	.			.	.	.
Alig confidence																						.	.	.	.	.								.	.	.	.			.	.	.												.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.
Template Sequence		K	K	L	K	D	V	I	F	V	T	A	G	Q	A	Q	A	D	A	K	E	N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	.	.	.	.	.	.	.	S	L	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C
Template Known Secondary structure																								G	G	G						S	S			B		T	T	S		B												.	.	.	.	.	.	.	T								S				T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.								.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		L	A	I	D	R	A	K	E	L	F	G	A	D	Y	A	N	.	.	V	Q	P	H	S	G	S	Q	A	N	F	A	V	Y	T	A	L	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	A	T	G	H	I	D
Query Conservation																		.	.
Alig confidence																		.	.																																					.	.	.															.
Template Conservation																																																								.	.	.															.
Template Sequence		A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G	I	H	H	L	I	H	N	Y	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	.	.	.	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	.	F	D	E	H	N	N	F	N
Template Known Secondary structure									G	G	G			S	S								S														S		T	T							S	S			T					.	.	.					T	T								S	.	B		T	T	S	S	B
Template Predicted Secondary structure																																																								.	.	.															.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160
		155	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190										.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.													.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.													.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	D	L	E	K	Q	A	.	.	.	.	.	K	E	H	K	P	K	M	I	I	G	G	F	.	.	S	A	Y	S	G	V	V	D	W	A	K	M	R	E	I	A	.	.	.	.	.	.	.	.	.	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P
Query Conservation										.	.	.	.	.													.	.																	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.													.	.																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N
Template Known Secondary structure																	S									S	S		T	T	T																						T	S	S										T	T	G	G	G	S	S							G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		219	220	.									.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.											.	.																																																					.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.											.	.																																																					.	.	.	.	.
Query Sequence		H	A	H	.	.	.	.	.	.	.	.	V	V	T	T	T	T	H	K	T	L	.	.	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	.	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.											.	.																																																					.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.											.	.																																																					.	.	.	.	.
Template Conservation
Template Sequence		K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y
Template Known Secondary structure		G	G	T	T			T	T									S	T	T	T	T	T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
					284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E	R	G	Y	K	V	V	S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S
Query Conservation		.	.	.
Alig confidence		.	.	.																																.										.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.										.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q	E	A	A	Q	V	G	L	P	X	L	P	Y	R	G	.	G	F	F	I	T	I	P	T	D	.	.	.	.	S	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	L	.	.	.	.	.	.	.	.	.	.	.	A	N
Template Known Secondary structure																											T								S	.	S	S							T	.	.	.	.	T											T	T							.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																				.										.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.												.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A	G	W	M	C	D	V	L	D	S	I
Query Conservation
Alig confidence									.	.	.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		G	I	R	I	A	A	C	.	.	.	.	.	G	I	P	K	C	Q	X	T	G	L	A	E	K	I	Y	N	A	X	K	S	L
Template Known Secondary structure							G	G	.	.	.	.	.	G	S						T	T												T
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		385	.	.	.	.	390	.						.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions