Job Description P0A825 Confidence 99.88% Date Thu Jan 5 11:06:42 GMT 2012 Rank 222 Aligned Residues 342 % Identity 15% Template c3oksB_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.			.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure												.	.					.	.	.
Query SS confidence												.	.					.	.	.
Query Sequence		Q	E	E	H	I	E	L	I	A	S	.	.	E	N	Y	T	.	.	.	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	A	D	Y	A	N	V	Q	P	H	S	G	S	Q
Query Conservation												.	.					.	.	.
Alig confidence												.	.					.	.	.													.	.	.	.																														.							.
Template Conservation																																	.	.	.	.																														.							.
Template Sequence		G	N	R	L	I	D	L	G	S	G	I	A	V	T	T	V	G	N	S	A	P	K	V	V	E	A	V	R	S	Q	V	.	.	.	.	G	D	F	T	H	T	C	F	M	V	T	P	Y	E	G	Y	V	A	V	C	E	Q	L	N	R	L	T	P	V	.	R	G	D	K	R	S	.	A	L	F	N	S	G	S	E
Template Known Secondary structure		S						S	S					T		T	T		T	T													.	.	.	.	T	T		S			T	T	T	T	S																S	S		.		S	S				.				S	S
Template Predicted Secondary structure																																	.	.	.	.																														.							.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.		.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.														.	.	140	.	.	.	.	.	.	.																.	.	150	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	F	A	V	Y	T	A	L	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	Y	N	I	V	P	Y	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	T	G	H
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	E	N	A	V	K	I	A	R	S	H	T	H	K	P	A	V	V	A	F	D	H	A	Y	H	G	R	T	N	L	T	M	A	L	T	A	K	V	M	P	Y	K	D	G	F	G	P	F	A	P	E	I	Y	R	A	P	L	S	Y	P	F	R	D	A	E	F	G	K	E	L	A	T	D	G	E	L	A	A	K
Template Known Secondary structure																							T	T					S	S											T	T	T	T	T	T			S			S	S													G	G	G						T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.
Predicted Secondary structure																								.	.									.	.	.	.																						.																.
Query SS confidence																								.	.									.	.	.	.																						.																.
Query Sequence		I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	M	I	I	G	G	F	.	.	S	A	Y	S	G	V	V	D	.	.	.	.	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	.	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	.	H	A	H	V	V	T
Query Conservation																								.	.									.	.	.	.																						.																.
Alig confidence																								.	.									.	.	.	.																						.																.
Template Conservation
Template Sequence		R	A	I	T	V	I	D	K	Q	I	G	A	D	N	L	A	A	V	V	I	E	P	I	Q	G	E	G	G	F	I	V	P	A	D	G	F	L	P	T	L	L	D	W	C	R	K	N	D	V	V	F	I	A	D	E	V	Q	T	G	F	A	R	T	G	A	M	F	A	C	E	H	E	G	I	D	P	D	L	I	V
Template Known Secondary structure											T		G	G	G								S	S	B	T	T	T	T		B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	T	H	K	T	L	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E
Query Conservation
Alig confidence				.	.																.	.	.
Template Conservation				.	.																.	.	.
Template Sequence		T	A	.	.	G	I	A	G	G	L	P	L	S	A	V	T	G	R	A	.	.	.	E	I	M	D	S	P	H	V	S	G	L	G	G	T	Y	G	G	N	P	I	A	C	A	A	A	L	A	T	I	E	T	I	E	S	E	G	L	V	A	R	A	Q	Q	I	E	K	I	M	K	D	R	L	G	R	L	Q	A	E
Template Known Secondary structure				.	.		T	T	T	T	S	S									.	.	.				T		S		T	T	S	S			S	S	S	S																		T	T
Template Predicted Secondary structure				.	.																.	.	.
Template SS confidence
		290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.							330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.
Query Sequence		R	G	Y	K	V	V	S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	.	.	.	.	.	.	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E
Query Conservation																											.	.	.	.	.	.
Alig confidence												.															.	.	.	.	.	.																		.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation												.																																						.	.	.	.	.	.	.	.																		.	.	.	.
Template Sequence		D	D	R	I	G	D	V	R	G	R	.	G	A	M	I	A	M	E	L	V	K	A	G	T	T	E	P	D	A	D	L	T	K	A	L	C	A	G	A	H	A	A	G	V	I	V	L	S	.	.	.	.	.	.	.	.	C	G	T	Y	G	N	V	V	R	F	L	P	P	L	S	I	G	.	.	.	.	D	D	L
Template Known Secondary structure			T	T								.	T	T							B	S	T	T	S			B															T	T						.	.	.	.	.	.	.	.			T	T	S									T	T			.	.	.	.
Template Predicted Secondary structure												.																																						.	.	.	.	.	.	.	.																		.	.	.	.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.									.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.					430	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	L	A	G	W	M	C	D	V	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	E	G	L	D	V	L	E	E	V	L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions