Job Description P0A825 Confidence 99.85% Date Thu Jan 5 11:06:42 GMT 2012 Rank 228 Aligned Residues 342 % Identity 11% Template c3i5tB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131 Resolution 2.00 Å

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		26	.	.	.	30	.	.	.	.	.			.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.					.	.	.																																																.	.
Query SS confidence												.	.					.	.	.																																																.	.
Query Sequence		Q	E	E	H	I	E	L	I	A	S	.	.	E	N	Y	T	.	.	.	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	.	.	G	A	D	Y	A	N	V	Q	P	H	S	G
Query Conservation												.	.					.	.	.																																																.	.
Alig confidence												.	.					.	.	.													.	.	.	.																			.	.	.	.										.	.						.
Template Conservation																																	.	.	.	.																			.	.	.	.																	.
Template Sequence		G	R	R	L	I	D	G	P	A	G	M	W	C	A	Q	V	G	Y	G	R	R	E	I	V	D	A	M	A	H	Q	A	.	.	.	.	M	V	L	P	Y	A	S	P	W	Y	M	A	T	S	P	A	A	R	.	.	.	.	L	A	E	K	I	A	T	L	T	P	G	D	L	N	R	I	.	F	F	T	T	G	G
Template Known Secondary structure								T	T					T		T	T		B														.	.	.	.								T	T	T									.	.	.	.							T	T	S	S	T	T					.				S	S
Template Predicted Secondary structure																																	.	.	.	.																			.	.	.	.																	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120
		99	100	.	.	.	.	.	.	.	.	.	110	.	.									.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.													140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query Sequence		S	Q	A	N	F	A	V	Y	T	A	L	L	E	P	.	.	.	.	.	.	.	.	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	I	V	P	Y	G	I	D	A	T	G	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.														.	.													.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation																																					.	.
Template Sequence		S	T	A	V	D	S	A	L	R	F	S	E	F	Y	N	N	V	L	G	R	P	Q	K	K	R	I	I	V	R	Y	D	G	Y	H	G	.	.	S	T	A	L	T	A	A	C	T	G	R	T	G	N	W	P	N	F	D	I	A	Q	D	R	I	S	F	L	S	S	P	N	P	R	H	A	G	N	R	S	Q	E	A
Template Known Secondary structure																			T	T		T	T								T	T					.	.	S	S						T				G	G	G		T	T	S					T	T									G	G	G		T	T	S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
							152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.
Predicted Secondary structure		.	.	.	.	.																								.	.									.	.	.	.																																.	.	.
Query SS confidence		.	.	.	.	.																								.	.									.	.	.	.																																.	.	.
Query Sequence		.	.	.	.	.	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	M	I	I	G	G	F	.	.	S	A	Y	S	G	V	V	D	.	.	.	.	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	.	.	.	P	N	P	V
Query Conservation		.	.	.	.	.																								.	.									.	.	.	.																																.	.	.
Alig confidence		.	.	.	.	.																								.	.									.	.	.	.																																.	.	.
Template Conservation
Template Sequence		F	L	D	D	L	V	Q	E	F	E	D	R	I	E	S	L	G	P	D	T	I	A	A	F	L	A	E	P	I	L	A	S	G	G	V	I	I	P	P	A	G	Y	H	A	R	F	K	A	I	C	E	K	H	D	I	L	Y	I	S	D	E	V	V	T	G	F	G	R	C	G	E	W	F	A	S	E	K	V	F	G
Template Known Secondary structure																			G	G	G								S	S	B	T	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	A	H	V	V	T	T	T	T	H	K	T	L	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	P	D	I	I	T	F	A	K	G	V	T	S	G	Y	V	P	L	G	G	L	A	I	S	E	A	V	L	A	R	I	S	G	E	N	A	K	G	S	W	F	T	N	G	Y	T	Y	S	N	Q	P	V	A	C	A	A	A	L	A	N	I	E	L	M	E	R	E	G	I	V	D	Q	A	R	E	M	A	D	Y
Template Known Secondary structure					S						G	G	G	G	T	T	S	S														T	T	S	G	G	G		T	T								T	T	T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.					330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure										.	.																									.	.	.	.
Query SS confidence										.	.																									.	.	.	.
Query Sequence		M	V	E	V	F	L	E	R	.	.	G	Y	K	V	V	S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	.	.	.	.	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R
Query Conservation										.	.																									.	.	.	.
Alig confidence										.	.																									.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	A	A	L	A	S	L	R	D	L	P	G	V	A	E	T	R	S	V	G	L	V	G	C	V	Q	C	L	L	G	T	A	E	D	K	A	F	T	L	K	I	D	E	R	C	F	E	L	G	L	I	V	R	P	L	G	.	.	.	.	.	.	.	.	.	.	.	D	L	C	V	I	S	P	P	L	I	I	S
Template Known Secondary structure								T	T	T	T	S	T	T								T	T																											T	T							T	.	.	.	.	.	.	.	.	.	.	.	T								T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.												.	.	.	.	420	.	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	F	K	E	A	E	A	K	E	L	A	G	W	M	C	D	V	L	D	S	I
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	R	A	Q	I	D	E	M	V	A	I	M	R	Q	A	I	T	E	V
Template Known Secondary structure		.	.	.	.
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions