Job Description P0A825 Confidence 100.00% Date Thu Jan 5 11:06:42 GMT 2012 Rank 12 Aligned Residues 353 % Identity 14% Template c3hqtB_ PDB info PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa Resolution 2.70 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.																		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		D	Y	D	A	E	L	W	Q	A	M	E	Q	E	K	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	E	H	I	E	L	I	A	S	E	N	Y	T	S	.	.	.	.	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.								.	.	.	.												.
Template Conservation																																										.																							.
Template Sequence		Q	L	P	D	F	I	Q	N	K	I	D	H	Y	I	E	N	Y	F	D	I	N	K	N	G	K	H	L	V	L	G	K	Q	A	S	P	D	D	I	I	L	.	Q	S	N	D	Y	L	A	L	A	N	H	P	L	I	K	A	R	L	A	K	S	L	.	L	E	E	Q	Q	S	L	F	M	S	A	S	F	L	Q	N
Template Known Secondary structure																			T	T	T	S	T	T	S	S		T	T			S				T	T	S				.					T	T			T	T													.		S							S	B	G	G	G	G		S
Template Predicted Secondary structure																																										.																							.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	A	D	Y	A	N	V	Q	P	H	S	G	S	Q	A	N	F	A	V	Y	T	A	L	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D
Query Conservation
Alig confidence			.	.	.																				.																																	.	.	.																				.	.
Template Conservation			.	.	.																				.																																	.	.	.																				.	.
Template Sequence		D	.	.	.	Y	D	K	P	M	I	E	K	R	L	A	K	F	T	G	F	D	E	C	.	L	L	S	Q	S	G	W	N	A	N	V	G	L	L	Q	T	I	C	Q	P	N	T	N	V	Y	I	D	F	F	A	H	M	.	.	.	S	L	W	E	G	A	R	Y	A	N	A	Q	A	H	P	F	M	H	N	.	.
Template Known Secondary structure		T	.	.	.	T	T	S												T		S			.				S																T	T							T	T	S			.	.	.									T	T								T	T	.	.
Template Predicted Secondary structure			.	.	.																				.																																	.	.	.																				.	.
Template SS confidence
		83				.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.
Predicted Secondary structure																												.	.																																									.	.	.	.	.
Query SS confidence																												.	.																																									.	.	.	.	.
Query Sequence		A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	M	I	I	G	G	F	.	.	S	A	Y	S	G	V	V	D	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	.	.	.	.	.	N	P	V	P	H	A	H
Query Conservation																												.	.																																									.	.	.	.	.
Alig confidence		.	.	.	.	.																						.	.																																									.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	N	C	D	H	L	R	M	L	I	Q	R	H	G	P	G	I	I	V	V	D	S	I	Y	S	T	L	G	T	I	A	P	L	A	E	L	V	N	I	S	K	E	F	G	C	A	L	L	V	D	E	S	H	S	L	G	T	H	G	P	N	G	A	G	L	L	A	E	L	G	L	T	R	E	V	H
Template Known Secondary structure		.	.	.	.	.														S							S	B		T	T	T			B													T	T								T	T	T	B	T	T	B	S	G	G	G							T	T		G	G	G		S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	T	T	T	T	H	K	T	L	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V
Query Conservation
Alig confidence												.																																																	.	.	.	.
Template Conservation												.																																																	.	.	.	.
Template Sequence		F	M	T	A	S	L	A	K	T	F	.	A	Y	R	A	G	A	I	W	C	N	N	E	V	N	R	C	V	P	F	I	S	Y	P	A	I	F	S	S	T	L	L	P	Y	E	A	A	G	L	E	T	T	L	E	I	I	E	S	A	.	.	.	.	D	N	R	R	Q	H	L	D	R	M	A	R	K	L	R	I	G
Template Known Secondary structure							S	S	S	T	T	.		S	S							S	S	S	G	G	G	T											S	B																				T	.	.	.	.
Template Predicted Secondary structure												.																																																	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.					.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	E	R	G	Y	K	V	V	S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E
Query Conservation
Alig confidence												.	.	.										.																																.	.	.														.	.	.	.
Template Conservation												.	.	.										.																																.	.	.														.	.	.	.
Template Sequence		L	S	Q	L	G	L	T	I	R	S	.	.	.	E	S	Q	I	I	G	L	E	T	.	G	D	E	R	N	T	E	K	V	R	D	Y	L	E	S	N	G	V	F	G	S	V	F	C	R	P	A	T	S	K	N	.	.	.	K	N	I	I	R	L	S	L	N	S	D	V	N	.	.	.	.	D	E	Q	I	A	K
Template Known Secondary structure					T	T						.	.	.		S	S							.		S														T	T								T	T	S	S		T	T	.	.	.										T	T			.	.	.	.
Template Predicted Secondary structure												.	.	.										.																																.	.	.														.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.				.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.					.	.	.	370	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	W	M	C	D	V	L	D	S	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	E	V	C	S	D	A	V	N	Y	G	D
Template Known Secondary structure														S
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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