 |
Job Description | P0A825 | Confidence | 24.75% | Date | Thu Jan 5 11:06:42 GMT 2012 |
Rank | 455 | Aligned Residues | 105 |
% Identity | 12% | Template | c3g8rA_ |
PDB info |
PDB header:biosynthetic protein | Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; |
PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
|
Resolution | 2.49 Å |
|
 |
  |   |
150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | |
|
|
|
. | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | |
|
|
. | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
| . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | G | H | I | D | Y | A | D | L | E | K | Q | A | K | E | . |
. |
. |
. |
H | K | P | K | M | I | I | G | G | F | S | A | Y | S | G | V | V | D | . |
. |
. |
W | A | K | M | R | E | I | A | D | S | I | G | A | Y | L | F | V | D | M | A | H | V | A | G | L | V | A | A | G | V | Y | P | N | P | V | P | H | A | H | V |
Query Conservation |   |
  |   |   |   |
|   |
|   |
|   |   |   |   |   |   | . | . | . | . |   |   |   |   |
|
|   |   |   |   |
|   |   |
|   |   |   |
| . | . | . |
|   |   |
|   |   |
|
|   |   |   |
|   |   |
|
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |
|
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|
Template Sequence |   |
T | A | G | A | R | R | E | D | I | D | K | V | V | S | F | X | L | H | R | G | K | D | L | T | I | X | H | C | V | A | E | Y | P | T | P | D | D | H | L | H | L | A | R | I | K | T | L | R | Q | Q | Y | A | G | V | R | I | G | Y | S | T | H | E | D | P | D | L | X | E | P | I | X | L | A | V | A | Q | G | A | T | V |
Template Known Secondary structure |   |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  |
|
|
|
| S | S |
|
| G | G | G |
|
| T | T |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |  |
|
|
| S | S |
|
|  |  |  |  |  |  |  |  | T | T |
|
|  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
142 | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . |
  |
  |   |
223 | |
|
. | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . |
Predicted Secondary structure |   |
 | . | . |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | . |
. |
T | T | T | T | H | K | T | L | A | G | P | R | G | G | L | I | L | A | K | G | G | S | E | E | L | Y | K | K | L | N | S | A |
Query Conservation |   |
  | . | . |   |   |
|   |   |
|   |
|   |
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|   |   |   |
|   |
|
| . |   |
|
|   |
|   |
|
|   |   |
|
|   |   |
|
|   |   |
Template Sequence |   |
F | E | K | H | V | G | L | P | T | D | Q | Y | G | I | N | N | . |
Y | S | A | N | P | E | Q | V | R | R | W | L | A | A | A | A | R | A |
Template Known Secondary structure |   |
 |  |  |  | B |
|
|
| B | T | T | B |
|
|
| T | . | T |
| B |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
222 | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | |
. | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|