Job Description P0A825 Confidence 99.96% Date Thu Jan 5 11:06:42 GMT 2012 Rank 136 Aligned Residues 357 % Identity 13% Template c3g7qA_ PDB info PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.		.	100	.
Predicted Secondary structure																																								.	.																								.	.												.
Query SS confidence																																								.	.																								.	.												.
Query Sequence		E	E	H	I	E	L	I	A	S	E	N	Y	T	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	.	.	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	.	.	A	D	Y	A	N	V	Q	P	H	S	G	.	S	Q	A
Query Conservation																																								.	.																								.	.												.
Alig confidence																																								.	.																								.	.												.
Template Conservation
Template Sequence		D	G	A	I	X	L	G	G	G	N	P	A	H	I	P	A	X	Q	D	Y	F	Q	T	L	L	T	D	X	V	E	S	G	K	A	A	D	A	L	C	N	Y	D	G	P	Q	G	K	T	A	L	L	N	A	L	A	V	L	L	R	E	T	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A
Template Known Secondary structure								S																									T								S	T	T		T	T	S																						G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		N	F	A	V	Y	T	A	L	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	M	I	I	G	G	F	.	S	A	Y	S	G	V
Query Conservation																																																																											.
Alig confidence																																													.	.	.																												.
Template Conservation																																													.	.	.
Template Sequence		F	F	Y	L	F	N	L	F	A	G	R	S	T	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	D	L	F	V	S	A	R	P	N	I	E	L	L	P	.	.	.	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	X	I	C	V	S	R	P	T	N	P	T	G	N	V
Template Known Secondary structure										S	B				B					S	S																							G	.	.	.	G	G								G	G	G					T	T								S	S		T	T	T
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		181	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure				.	.	.																																								.	.											.
Query SS confidence				.	.	.																																								.	.											.
Query Sequence		V	D	.	.	.	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	H	A	H	.	.	V	V	T	T	T	T	H	K	T	L	.	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S
Query Conservation				.	.	.																																								.	.											.
Alig confidence				.	.	.																																								.	.											.
Template Conservation
Template Sequence		I	T	D	E	E	L	X	K	L	D	R	L	A	N	Q	H	N	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	I	L	C	X	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N	D	K	T	I	T	A	I	A	N	X	N	G
Template Known Secondary structure																	T	T								T	T		T	T	T	T			B		S								T	T							S	G	G	G	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	.	.	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E	R	G	Y	K	V	V	S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E
Query Conservation																						.	.
Alig confidence																						.	.																																									.
Template Conservation																																																																.
Template Sequence		I	I	S	L	A	P	G	G	X	G	P	A	X	X	C	E	X	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	Q	T	I	A	I	I	R	R	Y	L	S	E	E	R	C	L	I	H	K	P	E	G	.	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	E	L
Template Known Secondary structure									S												T	T									T																						T	T	T								B	.	S	S							T	T		S	S
Template Predicted Secondary structure																																																																.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	.	.	.	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A	G	W	M	C	D	V	L	D	S	I
Query Conservation																					.	.	.
Alig confidence																					.	.	.																.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		L	Y	Q	R	L	K	A	R	G	V	L	X	V	P	G	H	Y	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	X	R	X	N	Y	.	.	.	.	.	.	V	P	E	P	D	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A
Template Known Secondary structure									T	T						G	G	G	G		T	T	B	S	S			G	G	G	G	G						S	.	.	.	.	.	.		S
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.							.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions