Return to main results Retrieve Phyre Job Id

Job DescriptionP0A825
Confidence99.83%DateThu Jan 5 11:06:42 GMT 2012
Rank230Aligned Residues348
% Identity12%Templatec3fcrA_
PDB info PDB header:transferaseChain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30..... .... 40.........50.........60.........70.........80.........90...... ...
Predicted Secondary structure 






..



...


















.
Query SS confidence 









. .



. . .
























































.


Query Sequence  QEEHIELIAS. . ENYT. . . SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPH. SGS
Query Conservation      
 
   .. 
  ...

 
  
        
           
               
 
 
     
   .


Alig confidence 









..



...











.








......




























.


Template Conservation 
   

         


  
 
  

    .         ......          

  
          
 
  


Template Sequence  GTKLLDAFAGLYCVNVGYGRQEIAEAIADQA. RELAYYHSY. . . . . . VGHGTEASITLAKXILDRAPKNXSKVYFGLGGS
Template Known Secondary structure 

TTT

S
B

.S




......TT


S
TTSS
Template Predicted Secondary structure 









.





......













Template SS confidence 















































































   48.50.........60.........70........ .80....... ..90.........100.........110.........120
 
   100.........110. ........120.........130.........140.........150...
Predicted Secondary structure 


........
























..................
Query SS confidence 











. . . . . . . .









































. . . . . . . . . . . . . . . . . .
Query Sequence  QANFAVYTALLE. . . . . . . . PGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHI. . . . . . . . . . . . . . . . . .
Query Conservation   
    
 

  ........


 
           
        
                ..................
Alig confidence 











........













..

























..................
Template Conservation 

 
 


 

  
   
   
  

     


.. 
      
                                   
Template Sequence  DANETNVKLIWYYNNILGRPEKKKIISRWRGYHG. . SGLVTGSLTGLELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEE
Template Known Secondary structure  TT
TT

TT



..SSS

GGGTTTTT
S
TT

S
GGG
S
TT

Template Predicted Secondary structure 











..
































Template SS confidence 















































































   121........130.........140.........150.... .....160.........170.........180.........190........
 
   154.....160.........170.... .....180.. .......190.........200.... .....210........
Predicted Secondary structure  ........








..







....



.













Query SS confidence  . . . . . . . .




















. .







. . . .





















.













Query Sequence  . . . . . . . . DYADLEKQAKEHKPKMIIGGF. . SAYSGVVD. . . . WAKMREIADSIGAYLFVDMAHV. AGLVAAGVYPNPVP
Query Conservation  ........
 
 
          

    ..
  
   
....
  
  

   
  



 
  . 
            
Alig confidence  ........




















..







....





















.













Template Conservation           

          




 


    
        
  
  
    
 


 


 

 

 
        
Template Sequence  QFVAHCVAELEALIEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXFGSDHYG
Template Known Secondary structure 
GGG
SSBSTTT
B


TTT

TTTSSSTTSSS
T
Template Predicted Secondary structure 
































Template SS confidence 















































































   199200.........210.........220.........230.........240.........250.........260.........270........
 
   219220.........230.........240.........250.... .....260.........270.........280.........290...
Predicted Secondary structure  .

















....













Query SS confidence  .



































. . . .






































Query Sequence  . HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNS. . . . AVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAK
Query Conservation  .  
    
  
 
 
  

 
               ....               

                      
Alig confidence  .



































....






































Template Conservation 
 


 
  
 
  
  

 
      
                  
     
  


 
 
               
  
Template Sequence  LEPDIITIAKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPIGAAAGVANLKLLDELNLVSNAGEVGAY
Template Known Secondary structure 


S
GGGTTTSS


S
S


TTTT
TT
Template Predicted Secondary structure 





























Template SS confidence 















































































   279280.........290.........300.........310.........320.........330.........340.........350........
 
   294.....300.........310.........320......... 330.........340.........350.........360...
Predicted Secondary structure 
















..........

















Query SS confidence 



































. . . . . . . . . .

































Query Sequence  NAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLT. . . . . . . . . . GKEADAALGRANITVNKNSVPNDPKSPFVTSGIR
Query Conservation      
   
   
  
                    ..........       
   

 
     
           

Alig confidence 




















.













..........























........

Template Conservation 
   
  
      
  


 .

   
                     
     
 

           ........

Template Sequence  LNATXAEALSQHANVGDVRGE. GLLCAVEFVKDRDSRTFFDAADKIGPQISAKLLEQDKIIARAXPQGDI. . . . . . . . LG
Template Known Secondary structure  TTSTTS.SS

SBTTTTB


GGG



SSSS........
Template Predicted Secondary structure 





.





















........
Template SS confidence 















































































   359360.........370......... 380.........390.........400.........410.........420....... ..
 
   364.....370.........380.........390.....
Predicted Secondary structure 








Query SS confidence 































Query Sequence  VGTPAITRRGFKEAEAKELAGWMCDVLDSIND
Query Conservation 
     
  
    

   
  
   
     
Alig confidence 







....



















Template Conservation    
 
  
.... 
 

  
  
  

  


Template Sequence  FAPPFCLT. . . . RAEADQVVEGTLRAVKAVLG
Template Known Secondary structure 


TT

....
Template Predicted Secondary structure 






....

Template SS confidence 































   430....... ..440.........450.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions