Job Description P0A825 Confidence 99.93% Date Thu Jan 5 11:06:42 GMT 2012 Rank 192 Aligned Residues 319 % Identity 15% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.						110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.															.												.	.	.	.	.
Query SS confidence																										.	.	.	.	.															.												.	.	.	.	.
Query Sequence		G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	.	.	.	.	.	L	F	G	A	D	Y	A	N	V	Q	P	H	S	G	.	S	Q	A	N	F	A	V	Y	T	A	L	.	.	.	.	.	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H
Query Conservation																										.	.	.	.	.															.												.	.	.	.	.
Alig confidence																										.	.	.	.	.															.												.	.	.	.	.																				.
Template Conservation																																																																																	.
Template Sequence		A	N	N	Y	P	V	P	D	R	C	L	V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G	T	A	A	I	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	D	K	I	A	I	N	E	P	I	F	T	P	Y	L	R	.
Template Known Secondary structure		T		S			S	S	S	S																		T	T	T				G	G	G																							T	T	S	S		T	T							S	S							T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.
Predicted Secondary structure																					.	.																											.									.	.	.												.
Query SS confidence																					.	.																											.									.	.	.												.
Query Sequence		G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	.	.	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	M	I	I	G	G	F	.	S	A	Y	S	G	V	V	D	.	.	.	W	A	K	M	R	E	I	A	D	S	I	.	G	A	Y	L	F	V	D	M	A
Query Conservation																					.	.																											.									.	.	.												.
Alig confidence		.	.																		.	.																											.									.	.	.												.
Template Conservation		.	.
Template Sequence		.	.	I	P	E	L	K	D	Y	E	L	V	E	V	D	L	H	S	Y	E	K	N	D	W	E	I	E	P	N	E	I	E	K	L	K	D	P	S	I	K	A	L	I	V	V	N	P	T	N	P	T	S	K	E	F	D	T	N	A	L	N	A	I	K	Q	A	V	E	K	N	P	K	L	X	I	I	S	D	E	V
Template Known Secondary structure		.	.	S	G	G	G	G	G	S											T	T	T	T	S											S		T	T								S	S		T	T	T		B																		T	T								T
Template Predicted Secondary structure		.	.
Template SS confidence
				208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	H	A	H	V	V	T	T	T	T	H	K	T	L	.	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																															.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	A	F	V	P	N	F	K	S	I	Y	S	V	V	P	Y	N	T	X	L	V	Y	S	Y	S	L	F	G	C	T	G	W	R	L	G	V	I	A	L	N	E	K	N	V	F	D	D	N	I	A	H	L	D	K	V	E	L	R	Q	L	H	K	R	Y	S	S	V	V	L	D	P	D	K	X	K	F	I	D	R
Template Known Secondary structure		T	G	G	G	S	T	T								S	G	G	G											S		G	G	G									S	S									T	S														T	T		S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
				249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.							.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure		.	.																																																								.	.	.	.	.	.
Query SS confidence		.	.																																																								.	.	.	.	.	.
Query Sequence		.	.	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	.	.	.	.	.	.	E	R	G	Y	K	V	V	S	G	G	T	D	N	H	L	F	L
Query Conservation		.	.																																																								.	.	.	.	.	.
Alig confidence		.	.																																																								.	.	.	.	.	.												.
Template Conservation																																																																												.
Template Sequence		L	C	A	D	S	R	S	I	G	L	Y	H	T	A	G	L	S	T	P	Q	Q	I	X	E	A	L	F	S	X	T	H	L	L	T	S	T	N	G	G	S	D	D	P	Y	I	D	I	A	R	K	L	V	S	E	R	Y	D	Q	L	H	D	A	X	Q	A	P	K	D	E	T	D	T	N	T	.	H	Y	Y	S	L
Template Known Secondary structure							T	T	T	T	T	G	G	G		S																		T	T		B	G	G	G	T	B																							T						S	T	T	B		.		S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440		.	.	.	.	.
		321	.	.	.	.	.																.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query Sequence		V	D	L	V	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	T	G	K	E	A	D	A	A	L	.	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A	G
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																	.	.	.	.	.										.	.	.	.	.
Template Conservation																																																			.	.	.	.	.										.	.	.	.	.
Template Sequence		I	D	I	Y	R	L	A	E	K	I	Y	G	K	E	F	R	D	Y	L	T	N	N	F	E	Q	V	D	F	L	L	K	L	A	E	K	N	G	V	V	L	V	D	G	V	G	F	G	A	K	.	.	.	.	.	P	G	E	L	R	V	S	Q	A	.	.	.	.	.	N	L	P	T	E	D	Y	A	L	I	G	K
Template Known Secondary structure																																					T	T	S	S	S		T	T					S	S	.	.	.	.	.	T	T						S	S	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																			.	.	.	.	.										.	.	.	.	.
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.						.	.	.	.	.	500	.	.	.						.	.	.	.	.	.	510	.	.	.	.	.
		385	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	M	C	D	V	L	D	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	L	E	L	L	K	E	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions