Job Description P0A825 Confidence 99.94% Date Thu Jan 5 11:06:42 GMT 2012 Rank 190 Aligned Residues 343 % Identity 11% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.																																																					.
Query SS confidence																											.	.																																																					.
Query Sequence		A	E	L	W	Q	A	M	E	Q	E	K	V	R	Q	E	E	H	I	E	L	I	A	S	E	N	.	.	Y	T	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	A	D	.
Query Conservation																											.	.																																																					.
Alig confidence																.											.	.																	.	.	.	.	.	.	.	.																													.
Template Conservation																.																													.	.	.	.	.	.	.	.
Template Sequence		E	R	L	R	A	L	L	K	E	I	T	P	K	K	.	R	G	L	D	L	G	I	G	E	P	Q	F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	.	.	.	.	.	.	.	.	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K	I	E	L
Template Known Secondary structure									T	T				S	S	.				B					S			S												T	T	G	G	G	.	.	.	.	.	.	.	.	G	G	S				T	T																		S
Template Predicted Secondary structure																.																													.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50									.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
			90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.										.													.	.
Query SS confidence		.										.													.	.
Query Sequence		.	Y	A	N	V	Q	P	H	S	G	.	S	Q	A	N	F	A	V	Y	T	A	L	L	.	.	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H
Query Conservation		.										.													.	.
Alig confidence		.										.													.	.															.	.	.																														.	.	.
Template Conservation																																									.	.	.																														.	.	.
Template Sequence		K	E	N	E	L	I	S	T	L	G	S	R	E	V	L	F	N	F	P	S	F	V	L	F	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	.	.	.	I	Y	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	L	N	.	.	.	E	K	E	L	Q	E
Template Known Secondary structure			G	G	G					S	S	S												T	T	T		S	S								S			T	.	.	.									T	T										G	G	G	T	T						.	.	.
Template Predicted Secondary structure																																									.	.	.																														.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.
		166	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.										.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure											.									.	.	.																																			.	.	.	.	.	.	.	.	.																.
Query SS confidence											.									.	.	.																																			.	.	.	.	.	.	.	.	.																.
Query Sequence		K	P	K	M	I	I	G	G	F	.	S	A	Y	S	G	V	V	D	.	.	.	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	.	.	.	.	.	.	.	.	.	V	P	H	A	H	V	V	T	T	T	T	H	K	T	L	.
Query Conservation											.									.	.	.																																			.	.	.	.	.	.	.	.	.																.
Alig confidence											.									.	.	.																																			.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		V	D	L	V	I	L	N	S	P	N	N	P	T	G	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L	S	K	R	S	S
Template Known Secondary structure			S						S	S		T	T	T																			T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T							S					T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
			232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E	R	G	Y	K	V	V
Query Conservation		.
Alig confidence		.																																.	.	.	.	.	.																																								.	.	.
Template Conservation																																		.	.	.	.	.	.																																								.	.	.
Template Sequence		A	P	G	L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	K	A	F	R	A	Y	L	G	Y	T	S	A	N	.	.	.	.	.	.	A	I	Q	K	A	S	E	A	A	W	L	D	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L	A	R	K	I	F	K	N	T	L	I	.	.	.
Template Known Secondary structure			G	G	G																													.	.	.	.	.	.													S																					S	T	T				.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.																																								.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.							.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A	G	W	M	C	D	V	L
Query Conservation
Alig confidence		.	.														.	.	.																												.	.										.	.	.	.	.	.
Template Conservation		.	.														.	.	.																												.	.										.	.	.	.	.	.
Template Sequence		.	.	Y	P	Y	S	F	Y	V	Y	L	P	V	Q	N	.	.	.	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	I	.	.	G	A	D	Y	V	R	L	A	L	.	.	.	.	.	.	V	Y	D	T	P	L	L	E	K	P	L	E	I	I	E	T	Y	R
Template Known Secondary structure		.	.		S	B	S	S							S		.	.	.															B				G	G	G	G		S	T	T	T	.	.	T	T	T							.	.	.	.	.	.		S
Template Predicted Secondary structure		.	.														.	.	.																												.	.										.	.	.	.	.	.
Template SS confidence
				305	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.							.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		391	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		372	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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