Job Description P0A825 Confidence 99.89% Date Thu Jan 5 11:06:42 GMT 2012 Rank 219 Aligned Residues 345 % Identity 16% Template c3dxvA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae Resolution 2.21 Å

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		26	.	.	.	30	.	.	.	.	.			.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.				.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure												.	.					.	.	.																																																.	.	.
Query SS confidence												.	.					.	.	.																																																.	.	.
Query Sequence		Q	E	E	H	I	E	L	I	A	S	.	.	E	N	Y	T	.	.	.	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	.	.	.	G	A	D	Y	A	N	V	Q	P	H	S
Query Conservation												.	.					.	.	.																																																.	.	.
Alig confidence												.	.					.	.	.													.	.	.	.																			.	.	.	.										.	.	.						.
Template Conservation																																	.	.	.	.																			.	.	.	.																		.
Template Sequence		G	R	E	L	I	D	L	S	G	A	W	G	A	A	S	L	G	Y	G	H	P	A	I	V	A	A	V	S	A	A	A	.	.	.	.	A	N	P	A	G	A	T	I	L	S	A	S	N	A	P	A	V	T	.	.	.	.	L	A	E	R	L	L	A	S	F	P	G	E	G	T	H	K	I	.	W	F	G	H	S
Template Known Secondary structure		S						S	S	T	T	T	T	T		T	T		B	S													.	.	.	.		S		S		S		S	S	S	S								.	.	.	.								T	T	T		T	T	T				.				S	S
Template Predicted Secondary structure																																	.	.	.	.																			.	.	.	.																		.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.
		98	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.										.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure											.	.	.																																								.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.																																								.	.	.	.	.	.	.	.	.
Query Sequence		G	S	Q	A	N	F	A	V	Y	.	.	.	T	A	L	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	.	.	.	.	.	.	.	.	.	G	I	D	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H
Query Conservation											.	.	.																																								.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																			.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.
Template Sequence		G	S	D	A	N	E	A	A	Y	R	A	I	V	K	A	T	G	R	S	G	V	I	A	F	A	G	A	Y	H	G	.	.	.	C	T	V	G	S	M	A	F	S	G	L	I	L	L	P	Y	P	D	P	Y	R	P	Y	R	N	D	P	T	G	D	A	I	L	T	L	L	T	E	K	L	A	A	V	P	A	G	S
Template Known Secondary structure																		S								T	T					.	.	.	S	S					T	T											S	S	S		B	T	T	B	T	T	S													T	S		T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		166	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure										.										.	.	.	.																							.															.
Query SS confidence										.										.	.	.	.																							.															.
Query Sequence		K	P	K	M	I	I	G	G	.	F	S	A	Y	S	G	V	V	D	.	.	.	.	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	.	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	.	H	A	H	V	V	T	T	T	T	H	K	T	L	A	G	P	R	G	G	L
Query Conservation										.										.	.	.	.																							.															.
Alig confidence										.										.	.	.	.																							.															.													.
Template Conservation																																																																										.
Template Sequence		I	G	A	A	F	I	E	P	I	Q	S	D	G	G	L	I	V	P	P	D	G	F	L	R	K	F	A	D	I	C	R	A	H	G	I	L	V	V	C	D	E	V	K	V	G	L	A	R	S	G	R	L	H	C	F	E	H	E	G	F	V	P	D	I	L	V	L	G	K	G	L	G	.	G	G	L	P	L	S	A
Template Known Secondary structure									S	S	B	S	T	T	T	S	B				T	T												T	T								T	T	T		T	T	T	T	S	S	S	S	G	G	G	G	T	T				S						G	G	G	G	.	T	T	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E	R	G	Y	K	V	V	S	G	G	T	D	N	H	L
Query Conservation
Alig confidence						.	.	.	.																																																																					.
Template Conservation						.	.	.	.																																																																					.
Template Sequence		V	I	A	P	.	.	.	.	A	E	I	L	D	C	A	S	A	F	A	M	Q	T	L	H	G	N	P	I	S	A	A	A	G	L	A	V	L	E	T	I	D	R	D	D	L	P	A	M	A	E	R	K	G	R	L	L	R	D	G	L	S	E	L	A	K	R	H	P	L	I	G	D	I	R	G	R	.	G	L	A
Template Known Secondary structure						.	.	.	.					T	S		S	S	S	S			T	T	T	T																		T	T																								T	T								.	T	T
Template Predicted Secondary structure						.	.	.	.																																																																					.
Template SS confidence
		278	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.
		319	320	.	.	.								.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure							.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.
Query Sequence		F	L	V	D	L	.	.	.	.	.	.	.	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A	G	W	M	C	D	V	L	D
Query Conservation							.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		C	G	M	E	L	V	C	D	R	Q	S	R	E	P	A	R	A	E	T	A	K	L	I	Y	R	A	Y	Q	L	G	L	V	V	Y	Y	V	G	M	N	G	.	.	.	.	.	.	.	.	N	V	L	E	F	T	P	P	L	T	I	T	.	.	.	.	E	T	D	I	H	K	A	L	D	L	L	D	R	A	F	S
Template Known Secondary structure										T	T	T	T																		T							S	T	T	S	.	.	.	.	.	.	.	.									T	T			.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.									.	.	.	.	.	.	.	400	.	.	.	.					.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		392	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	N	D	E	A	V	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	S	A	V	S	N	E	E
Template Known Secondary structure		T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions