Job Description P0A825 Confidence 99.90% Date Thu Jan 5 11:06:42 GMT 2012 Rank 214 Aligned Residues 343 % Identity 13% Template c3dodA_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.			.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.
Predicted Secondary structure												.	.					.	.	.																																																										.
Query SS confidence												.	.					.	.	.																																																										.
Query Sequence		Q	E	E	H	I	E	L	I	A	S	.	.	E	N	Y	T	.	.	.	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	A	D	Y	A	N	V	Q	P	H	.	S	G	S
Query Conservation												.	.					.	.	.																																																										.
Alig confidence												.	.					.	.	.													.	.	.	.																			.	.	.	.																				.
Template Conservation																																	.	.	.	.																			.	.	.	.
Template Sequence		G	K	E	Y	Y	D	G	F	S	S	V	W	L	N	V	H	G	H	R	K	K	E	L	D	D	A	I	K	K	Q	L	.	.	.	.	G	K	I	A	H	S	T	L	L	G	M	T	N	V	P	A	T	Q	.	.	.	.	L	A	E	T	L	I	D	I	S	P	K	K	L	T	R	V	F	Y	S	D	S	G	A
Template Known Secondary structure		S						T	T					T		S	S		B	S													.	.	.	.	T	T		S					S	S	S								.	.	.	.									S		T	T								S	S
Template Predicted Secondary structure																																	.	.	.	.																			.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.					.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.									.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.
Query Sequence		Q	A	N	F	A	V	Y	T	A	L	L	E	.	.	.	.	.	.	.	.	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	M	I	I
Query Conservation														.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.
Template Sequence		E	A	M	E	I	A	L	K	M	A	F	Q	Y	W	K	N	I	G	K	P	E	K	Q	K	F	I	A	M	K	S	Y	K	A	P	I	P	Y	V	Y	R	S	E	S	G	D	P	D	E	C	R	D	Q	C	L	R	.	.	.	.	.	.	.	E	L	A	Q	L	L	E	E	H	H	E	E	I	A	A	L	S	I
Template Known Secondary structure																		T	T		T	T																		T	T	S	S	S													.	.	.	.	.	.	.										G	G	G
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.								170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		172	.			.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure				.	.										.	.	.	.																																							.	.
Query SS confidence				.	.										.	.	.	.																																							.	.
Query Sequence		G	G	.	.	F	S	A	Y	S	G	V	V	D	.	.	.	.	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	H	A	.	.	H	V	V	T	T	T	T	H	K	T	L	A	G	P	R	G	G	L	I	L	A	K	G
Query Conservation				.	.										.	.	.	.																																							.	.
Alig confidence				.	.										.	.	.	.																																							.	.
Template Conservation
Template Sequence		E	S	M	V	Q	G	A	S	G	M	I	V	M	P	E	G	Y	L	A	G	V	R	E	L	C	T	T	Y	D	V	L	M	I	V	D	E	V	A	T	G	F	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	L	M	A	A	G	K	G	I	T	G	G	Y	L	P	I	A	V	T	F	A	T	E
Template Known Secondary structure			S	S			S	T	T	T						T	T												T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S						G	G	G	G	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.													.	.	.	.	.	310	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E	.	.	.	.	.	.	.	.	.	.	.	.	R	G	Y	K	V	V	S
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	I	Y	K	A	F	Y	D	D	Y	E	N	L	K	T	F	F	H	G	H	S	Y	T	G	N	Q	L	G	C	A	V	A	L	E	N	L	A	L	F	E	S	E	N	I	V	E	Q	V	A	E	K	S	K	K	L	H	F	L	L	Q	D	L	H	A	L	P	H	V	G	D	I	R	Q	L	G	F	M	C	G	A
Template Known Secondary structure						T	T		S		G	G	G									T	T	T	T																		T	T																				T	T	S	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A	G	W	M	C	D	V	L	D
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		E	L	V	R	S	K	E	T	K	E	P	Y	P	A	D	R	R	I	G	Y	K	V	S	L	K	M	R	E	L	G	M	L	T	R	P	L	G	.	.	.	.	.	.	.	.	.	.	.	D	V	I	A	F	L	P	P	L	A	S	T	.	.	.	.	A	E	E	L	S	E	M	V	A	I	M	K	Q	A	I	H
Template Known Secondary structure					S	B	T	T	T	T	B				G	G	G													T	T							T	.	.	.	.	.	.	.	.	.	.	.	T								T	T			.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.												.	.	.	.	.	.	420	.	.	.	.	.					.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		392	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	N	D	E	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	T	S	L	E	D
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions