Job Description P0A825 Confidence 99.97% Date Thu Jan 5 11:06:42 GMT 2012 Rank 84 Aligned Residues 362 % Identity 14% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		2	.	.	.	.	.	.	.	10	.	.	.						.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure														.	.	.	.	.													.	.													.	.
Query SS confidence														.	.	.	.	.													.	.													.	.
Query Sequence		L	K	R	E	M	N	I	A	D	Y	D	A	.	.	.	.	.	E	L	W	Q	A	M	E	Q	E	K	V	R	.	.	Q	E	E	H	I	E	L	I	A	S	E	N	.	.	Y	T	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D
Query Conservation														.	.	.	.	.													.	.													.	.
Alig confidence														.	.	.	.	.													.	.													.	.																	.	.
Template Conservation																																																															.	.
Template Sequence		M	K	R	N	P	H	F	V	S	L	T	K	N	Y	L	F	A	D	L	Q	K	R	V	A	Q	F	R	L	E	N	P	Q	H	T	V	I	N	L	S	I	G	D	T	T	Q	P	L	N	A	S	V	A	E	A	F	A	S	S	I	A	R	.	.	L	S	S	P	T	T	C	R	G	Y	G	P	D	F	G	L	P
Template Known Secondary structure										T																						T	T	S						S	S																						.	.		T	S	S	S								T	T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	.	.	.	A	D	Y	A	N	V	Q	P	H	S	G	S	Q	A	N	F	A	V	Y	T	A	L	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	A
Query Conservation																	.	.	.
Alig confidence			.	.	.	.											.	.	.																																										.	.
Template Conservation			.	.	.	.																																																							.	.
Template Sequence		A	.	.	.	.	L	R	Q	K	L	S	E	D	F	Y	R	G	F	V	D	A	K	E	I	F	I	S	D	G	A	K	V	D	L	F	R	L	L	S	F	F	G	P	N	Q	T	V	A	I	Q	D	P	S	Y	P	A	Y	L	D	.	.	I	A	R	L	T	G	A	K	E	I	I	A	L	P	C	L	Q	E	N
Template Known Secondary structure			.	.	.	.								T	T	S	T	T	S	S		G	G	G					S															S	S								S								.	.					T	T		S									G	G	G
Template Predicted Secondary structure			.	.	.	.																																																							.	.
Template SS confidence
		79					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																											.								.	.	.																																									.	.	.	.
Query SS confidence																											.								.	.	.																																									.	.	.	.
Query Sequence		T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	M	I	I	G	G	F	.	S	A	Y	S	G	V	V	.	.	.	D	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	H	A	H	.	.	.	.
Query Conservation																											.								.	.	.																																									.	.	.	.
Alig confidence										.	.	.	.	.													.								.	.	.																																									.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		A	F	F	P	E	F	P	E	.	.	.	.	.	D	T	H	I	D	I	L	C	L	C	S	P	N	N	P	T	G	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	T	F	I	S	D	P	S	L	P	K	S	I	F	E	I	P	D	A	R	F	C
Template Known Secondary structure		T	T						T	.	.	.	.	.	T				S						S	S		T	T	T																			T	T								T	T	G	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G	T
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
			222	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure		.											.	.																	.
Query SS confidence		.											.	.																	.
Query Sequence		.	V	V	T	T	T	T	H	K	T	L	.	.	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	.	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A
Query Conservation		.											.	.																	.
Alig confidence		.											.	.																	.
Template Conservation
Template Sequence		A	I	E	I	N	S	F	S	K	P	L	G	F	A	G	I	R	L	G	W	T	V	I	P	Q	E	L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	I	L	P	Q	L	E	A	I	H	Y	Y	R	E	N	S	D	L
Template Known Secondary structure										G	G	G	T	T	T	T										T	T		B		T	T	S		B																															T	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		M	V	E	V	F	L	E	R	G	Y	K	V	V	S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	.	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E
Query Conservation																																									.
Alig confidence																			.																						.									.	.	.	.																			.	.	.	.	.	.
Template Conservation																			.																															.	.	.	.																			.	.	.	.	.	.
Template Sequence		L	R	K	A	L	L	A	T	G	F	E	V	F	G	G	E	H	.	A	P	Y	L	W	V	K	P	T	Q	A	N	I	S	D	R	D	L	F	D	F	F	L	R	E	Y	H	I	A	I	.	.	.	.	T	P	G	I	G	F	G	R	S	G	S	G	F	V	R	F	S	S	.	.	.	.	.	.	L	G	K	R
Template Known Secondary structure									T	T							S	S	.	S	S									T	T			T	T	T										S				.	.	.	.			G	G	G	G		G	G	G	T	T							.	.	.	.	.	.		S
Template Predicted Secondary structure																			.																															.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.							.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	A	K	E	L	A	G	W	M	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	I	L	A	A	C	E	R	L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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