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Job DescriptionP0A825
Confidence99.94%DateThu Jan 5 11:06:42 GMT 2012
Rank179Aligned Residues314
% Identity17%Templatec2gqnB_
PDB info PDB header:lyaseChain: B: PDB Molecule:cystathionine beta-lyase; PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60.........70.........80.........90.........100.........110.........120....
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Query Sequence  QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHG
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Template Sequence  EAKKHATRNRANGELFYGRRGTLTH. . . . . . FSLQQAMCELEGGAGC. VLFPCGAAAVANSILAFIEQGDHVLMTNTAYE
Template Known Secondary structure  TTTTTS

BGGG

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   40.........50.........60.... .....70.........80 .........90.........100.........110..
 
   125....130.. .......140.........150.........160.........170.... .....180.........190.. .......200
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Query Sequence  GHLTHGSP. VNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGF. SAYSGVVDWAKMREIADS. . IGAYLFVD
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Template Sequence  PSQDFCSKILSKLGVTTSWFDPL. . . . . . . IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID
Template Known Secondary structure  TGGGGT

TT.......
GGGGGGG

TTSS
TTT





TT
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   113......120.........130..... ....140.........150.........160.........170.........180.....
 
   201........210.........220.........230...... ...240.........250.........260.........270.......
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Query Sequence  MAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG. . . GLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALK
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Template Sequence  NTWAAGVLFKA. . . . LDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDA. . . . . . . . . DTAYIT
Template Known Secondary structure 
TTTTTTSS
G....GGGT
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   186...190...... ...200.........210.........220.........230.........240...... ...250..
 
   278.280.........290.........300........ .310......... 320.........330.........340.
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Query Sequence  EAMEPEFKTYQQQVAKNAKAMVEVFLERGYK. . VVSGGTDNHLF. . . . . . . . . . . . . . LVDLVDKNLTGKEADAALGRAN
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Template Sequence  SRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFS
Template Known Secondary structure  TT
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   253......260.........270.........280.........290.........300.........310.........320.........330..
 
   342....... 350.........360.........370.........380.........390...
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Query Sequence  ITVNKNSV. . . . . . . . . . . . . . . . . . PNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSI
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Template Sequence  LFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL. . . . . . . . EDVDDLIADLDAGFARI
Template Known Secondary structure  S

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TT
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   333......340.........350.........360.........370....... ..380.........390....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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