Job Description P0A825 Confidence 48.24% Date Thu Jan 5 11:06:42 GMT 2012 Rank 366 Aligned Residues 179 % Identity 12% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.													.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.		.	100	.	.
Predicted Secondary structure																	.	.																					.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.				.
Query SS confidence																	.	.																					.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.				.
Query Sequence		R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	.	.	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	L	A	I	D	R	A	K	E	L	F	G	A	D	Y	A	N	V	Q	P	.	.	.	.	H	S	G	.	S	Q	A	N
Query Conservation																	.	.																					.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.				.
Alig confidence																	.	.																					.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.				.
Template Conservation
Template Sequence		E	K	V	R	D	V	A	A	E	L	L	D	I	Y	A	Q	R	A	A	K	E	G	F	A	F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A
Template Known Secondary structure																				T	S																		T			S																			S	S	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		F	A	V	Y	T	A	L	L	E	P	G	D	T	V	L	G	M	N	L	A	H	.	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	M	I	I	G	G	F	S	A	Y	S	G	V	V
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	D	V
Template Known Secondary structure										T	T	T								S	S															S	T	T	T	T							S	T	T	S														T	T			S						T					S
Template Predicted Secondary structure
Template SS confidence
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	H	A	H	V	V	T	T	T	T	H
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.
Template Sequence		K	F	K	D	L	.	.	.	.	.	.	.	.	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T
Template Known Secondary structure				S	S		.	.	.	.	.	.	.	.							S	G	G	G	S													T	T	S							S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.
Template SS confidence
		719	720	.	.	.									.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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