Job Description P0A825 Confidence 99.87% Date Thu Jan 5 11:06:42 GMT 2012 Rank 225 Aligned Residues 323 % Identity 16% Template c2eo5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:419aa long hypothetical aminotransferase; PDBTitle: crystal structure of 4-aminobutyrate aminotransferase from sulfolobus2 tokodaii strain7 Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.			.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.
Predicted Secondary structure												.	.					.	.	.	.																																																		.	.
Query SS confidence												.	.					.	.	.	.																																																		.	.
Query Sequence		Q	E	E	H	I	E	L	I	A	S	.	.	E	N	Y	T	.	.	.	.	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	A	.	.	D	Y	A	N	V	Q	P	H	S
Query Conservation												.	.					.	.	.	.																																																		.	.
Alig confidence												.	.					.	.	.	.													.																			.	.	.	.	.	.	.												.	.
Template Conservation																																		.																			.	.	.	.	.	.	.
Template Sequence		G	N	K	Y	L	D	F	T	S	G	I	G	V	N	N	L	G	W	P	S	H	P	E	V	I	K	I	G	I	E	Q	M	.	Q	K	L	A	H	A	A	A	N	D	F	Y	N	I	P	Q	L	E	.	.	.	.	.	.	.	L	A	K	K	L	V	T	Y	S	P	G	N	F	Q	K	K	V	F	F	S	N	S
Template Known Secondary structure		S						S	S	G	G	G	G	T	T	T	T		B	S														.	T	T	S				S		S		S								.	.	.	.	.	.	.									S	S		S	S								S	S
Template Predicted Secondary structure																																		.																			.	.	.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.														.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																		.																										.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																										.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	Q	A	N	F	A	V	Y	T	A	L	L	E	P	G	.	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	N	I	V	P	Y	G	I	D	A	T	G	H	I	D	.	.	.	.	.	.	.	.	.
Query Conservation																		.																										.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Alig confidence																		.													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.
Template Sequence		G	T	E	A	I	E	A	S	I	K	V	V	K	N	T	G	R	K	Y	I	I	A	F	L	G	G	F	H	G	.	.	R	T	F	G	S	I	S	L	T	A	S	K	A	V	Q	R	S	I	V	G	P	F	M	P	G	V	I	H	V	P	Y	P	N	P	Y	R	N	P	W	H	I	N	G	Y	E	N	P	S	E
Template Known Secondary structure															T	T	S								T	T					.	.	S	S									S		G	G	G	G		S	S					T	T									S	S	S		T	T				T	T	T
Template Predicted Secondary structure																															.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
							155	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.											.	.	.	.	.											.	.									.	.	.	.																						.
Query SS confidence		.	.	.	.	.											.	.	.	.	.											.	.									.	.	.	.																						.
Query Sequence		.	.	.	.	.	Y	A	D	L	E	K	Q	A	K	E	.	.	.	.	.	H	K	P	K	M	I	I	G	G	F	.	.	S	A	Y	S	G	V	V	D	.	.	.	.	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	.	V	A	G	L	V	A	A	G	V	Y	P	N	P	V
Query Conservation		.	.	.	.	.											.	.	.	.	.											.	.									.	.	.	.																						.
Alig confidence		.	.	.	.	.											.	.	.	.	.											.	.									.	.	.	.																						.
Template Conservation
Template Sequence		L	V	N	R	V	I	E	F	I	E	D	Y	I	F	V	N	L	V	P	P	E	E	V	A	G	I	F	F	E	P	I	Q	G	E	G	G	Y	V	I	P	P	K	N	F	F	A	E	L	Q	K	L	A	K	K	Y	G	I	L	L	V	D	D	E	V	Q	M	G	L	G	R	T	G	K	L	F	A	I	E	N	F
Template Known Secondary structure													T					T			G	G	G								S	S	B	T	T	T	T	S	B				T	T													T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		218		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		P	.	H	A	H	V	V	T	T	T	T	H	K	T	L	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K
Query Conservation			.
Alig confidence			.																												.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		N	T	V	P	D	V	I	T	L	A	K	A	L	G	G	G	I	M	P	I	G	A	T	I	F	R	K	D	L	.	.	.	.	.	.	.	.	.	.	.	.	D	F	K	T	F	G	G	N	A	L	A	C	A	I	G	S	K	V	I	D	I	V	.	.	.	.	.	K	D	L	L	P	H	V	N	E	I	G	K
Template Known Secondary structure		T				S						G	G	G	G	T	T	T	S									G	G	G	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.													300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	V	E	V	F	L	E	R	G	Y	K	V	V	S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E
Query Conservation
Alig confidence																				.	.	.	.																															.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation																				.	.	.	.																															.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		I	F	A	E	E	L	Q	G	L	A	D	D	V	R	G	I	G	L	.	.	.	.	A	W	G	L	E	Y	N	E	K	K	V	R	D	R	I	I	G	E	S	F	K	R	G	L	L	L	L	P	A	G	.	.	.	.	.	.	.	.	.	.	R	S	A	I	R	V	I	P	P	L	V	I	S	.	.	.	.	E
Template Known Secondary structure								T	T	S	S	S						T	T	.	.	.	.							S															T	T							T	.	.	.	.	.	.	.	.	.	.	T	T								T	T			.	.	.	.
Template Predicted Secondary structure																				.	.	.	.																															.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.											.	.	390	.	.	.	.	.	.	.	.	.	400					.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	A	K	E	L	A	G	W	M	C	D	V	L	D	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	A	K	Q	G	L	D	I	L	K	K	V	I	K	V	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions