Job Description P0A825 Confidence 99.97% Date Thu Jan 5 11:06:42 GMT 2012 Rank 58 Aligned Residues 347 % Identity 17% Template c2dr1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3 Resolution 1.90 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	L	W	Q	A	M	E	Q	E	K	V	R	Q	E	E	H	I	E	L	I	A	S	E	N	Y	T	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	A	D	Y	A	N	.
Query Conservation																																																																																	.
Alig confidence									.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation									.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	Y	E	M	V	K	.	.	.	.	.	.	P	K	Y	K	L	F	T	A	G	P	V	A	C	F	P	E	V	L	E	I	M	K	V	Q	M	F	S	H	R	.	.	.	.	.	.	.	.	.	.	.	.	S	K	E	Y	R	K	V	H	M	D	T	V	E	R	L	R	E	F	L	E	V	E	K	G	E	V
Template Known Secondary structure								S	.	.	.	.	.	.			S					S	S	S											T	T	S					T	T	.	.	.	.	.	.	.	.	.	.	.	.	S																			T		S	S	S
Template Predicted Secondary structure									.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.													.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
			93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	V	Q	P	H	S	G	S	Q	A	N	F	A	V	Y	T	A	L	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P	K	M	I	I
Query Conservation		.
Alig confidence		.																																				.																	.	.
Template Conservation																																						.																	.	.
Template Sequence		L	L	V	P	S	S	G	T	G	I	M	E	A	S	I	R	N	G	V	S	K	G	G	K	V	L	V	T	I	I	G	A	F	G	K	R	.	Y	K	E	V	V	E	S	N	G	R	K	A	V	V	L	E	.	.	Y	E	P	G	K	A	V	K	P	E	D	L	D	D	A	L	R	K	N	P	D	V	E	A	V
Template Known Secondary structure					S	S														S		T	T								S	S						.								T	T								.	.			T	T																T	T
Template Predicted Secondary structure																																						.																	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		172	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure					.	.	.																																																																						.	.	.	.	.
Query SS confidence					.	.	.																																																																						.	.	.	.	.
Query Sequence		G	G	F	.	.	.	S	A	Y	S	G	V	V	D	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	H	A	H	V	V	T	T	T	T	H	K	T	L	A	G	P	R	G	G	L	I	L	A	K	G	.	.	.	.	.
Query Conservation					.	.	.																																																																						.	.	.	.	.
Alig confidence					.	.	.																																										.	.	.																										.	.	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		T	I	T	Y	N	E	T	S	T	G	V	L	N	P	L	P	E	L	A	K	V	A	K	E	H	D	K	L	V	F	V	D	A	V	S	A	M	G	G	A	D	I	K	F	D	K	W	.	.	.	G	L	D	V	V	F	S	S	S	Q	K	A	F	G	V	P	P	G	L	A	I	G	A	F	S	E	R	F	L	E
Template Known Secondary structure					S			T	T	T	T															T	T								T	T	T	B	T	T	B				T	T	T	T	.	.	.	T		S						T	T	S	T	T				S	S
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
													244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E	R	G	Y	K	V	V	S	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	E	K	M	P	E	R	G	W	Y	F	D	I	P	L	Y	V	K	Y	L	K	E	K	E	S	T	P	S	T	P	P	M	P	Q	V	F	G	I	N	V	A	L	R	I	I	E	K	M	G	G	K	E	K	W	L	E	M	Y	E	K	R	A	K	M	V	R	E	G	V	R	E	I	G	L	D	I	L	A	E
Template Known Secondary structure				T	T		T	T			S	T	T													S	S		S	S																				T	T																							T	T			B	S	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		313	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		G	T	.	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A	G	W	M	C	D	V	L	D
Query Conservation				.
Alig confidence				.																																										.	.	.	.	.	.											.	.	.	.
Template Conservation																																														.	.	.	.	.	.											.	.	.	.
Template Sequence		P	G	H	E	S	P	T	I	T	A	V	L	T	P	P	G	I	K	G	D	E	V	Y	E	A	M	R	K	R	G	F	E	L	A	K	G	Y	G	S	V	K	E	K	T	.	.	.	.	.	.	F	R	I	G	H	M	G	Y	M	K	.	.	.	.	F	E	D	I	Q	E	M	L	D	N	L	R	E	V	I	N
Template Known Secondary structure		T	T		B		S	S								T	T													T	T								G	G	G	T	T	T		.	.	.	.	.	.							S	S			.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.											.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.							.	.	.	.	.	.	.	.	360	.					.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		392	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		378	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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