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Job DescriptionP0A825
Confidence99.97%DateThu Jan 5 11:06:42 GMT 2012
Rank58Aligned Residues347
% Identity17%Templatec2dr1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.........60.........70.........80.........90..
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Query Sequence  ELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYAN.
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Template Sequence  EVYEMVK. . . . . . PKYKLFTAGPVACFPEVLEIMKVQMFSHR. . . . . . . . . . . . SKEYRKVHMDTVERLREFLEVEKGEV
Template Known Secondary structure  S......

S

SSS



TTS



TT............ST
SSS
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   12...... .20.........30.........40....... ..50.........60.........70...
 
   93......100.........110.........120.........130.........140.........150.........160.........170.
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Query Sequence  . VQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMII
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Template Sequence  LLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKR. YKEVVESNGRKAVVLE. . YEPGKAVKPEDLDDALRKNPDVEAV
Template Known Secondary structure  SS
S
TT
SS.TT
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TT

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   74.....80.........90.........100......... 110.........120..... ....130.........140.........150
 
   172.. .....180.........190.........200.........210.........220.........230.........240...
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Query Sequence  GGF. . . SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKG. . . . .
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Template Sequence  TITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKW. . . GLDVVFSSSQKAFGVPPGLAIGAFSERFLE
Template Known Secondary structure  STTTT

TT

TTTBTTB


TTTT...T
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   151........160.........170.........180.........190....... ..200.........210.........220.......
 
   244.....250.........260.........270.........280.........290.........300.........310..
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Query Sequence  . . . . . . . . . . . GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSG
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Template Sequence  IAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAE
Template Known Secondary structure  TT
TT

STT
SS
SS


TT
TT

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   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   313. .....320.........330.........340.........350.........360.........370.........380.........390.
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Query Sequence  GT. DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD
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Template Sequence  PGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKT. . . . . . FRIGHMGYMK. . . . FEDIQEMLDNLREVIN
Template Known Secondary structure  TT
B
SS

TT

TT


GGGTTT......

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   308.310.........320.........330.........340.........350. ........360. ........370.......
 
   392..
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Query Sequence  SIN
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Template Sequence  ELK
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   378.380
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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