Job Description P0A825 Confidence 99.96% Date Thu Jan 5 11:06:42 GMT 2012 Rank 112 Aligned Residues 348 % Identity 14% Template c2douA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 Resolution 2.30 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		E	L	W	Q	A	M	E	Q	E	K	V	R	Q	E	E	H	I	E	L	I	A	S	E	N	Y	T	.	.	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	G	A	D	Y	A
Query Conservation																												.	.
Alig confidence																												.	.																							.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.
Template Sequence		V	V	D	E	A	K	R	K	A	R	E	R	G	V	G	L	I	D	L	S	I	G	S	T	D	L	P	P	P	E	A	P	L	K	A	L	A	E	A	L	N	D	P	T	T	Y	G	Y	C	L	.	.	.	.	.	.	K	S	C	T	L	P	F	L	E	E	A	A	R	W	Y	E	G	R	Y	G	V	G	L	D
Template Known Secondary structure													T	T							S	S																			T	T		G	G	G	S	S				.	.	.	.	.	.																				S
Template Predicted Secondary structure																																																				.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.							.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
						92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	N	V	Q	P	H	S	G	S	Q	A	N	F	A	V	Y	T	A	L	L	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	V	P	Y	G	I	D	A	T	G	H	I	D	Y	A	D	L	E	K	Q	A	K	E	H	K	P
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																												.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		P	R	R	E	A	L	A	L	I	G	S	Q	E	G	L	A	H	L	L	L	A	L	T	E	P	E	D	L	L	L	L	P	E	V	A	Y	P	S	Y	F	G	A	A	R	V	A	S	.	.	.	.	.	L	R	T	F	L	I	P	L	R	E	D	G	L	A	D	L	K	A	V	P	E	G	V	W	R	E	A	K
Template Known Secondary structure		T	T	T	S					S	S															T	T							S	S												T	T	.	.	.	.	.								B		T	T	S	S	B		G	G	G	S
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		168	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.							.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																																														.	.	.	.	.	.
Query SS confidence											.	.	.	.																																														.	.	.	.	.	.
Query Sequence		K	M	I	I	G	G	F	S	A	.	.	.	.	Y	S	G	V	V	D	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	H	A	H	.	.	.	.	.	.	V	V	T	T	T	T	H	K	T	L	A	G	P	R	G	G
Query Conservation											.	.	.	.																																														.	.	.	.	.	.
Alig confidence											.	.	.	.																																														.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	L	L	N	Y	P	N	N	P	T	G	A	V	A	D	W	G	Y	F	E	E	A	L	G	L	A	R	K	H	G	L	W	L	I	H	D	N	P	Y	V	D	Q	V	Y	E	G	E	A	P	S	P	L	A	L	P	G	A	K	E	R	V	V	E	L	F	S	L	S	K	S	Y	N	L	A	G	F	R	L	G
Template Known Secondary structure							S	S		T	T	T																			T	T								T	T	G	G	G	B	S	S	S					G	G	G	S	T	T	G	G	G	T												T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E	R	G	Y	K	V	V	S	G	G	T	D	N	H
Query Conservation
Alig confidence																						.	.	.	.	.																																																				.	.
Template Conservation																						.	.	.	.	.																																																				.	.
Template Sequence		F	A	L	G	S	E	E	A	L	A	R	L	E	R	V	K	G	V	I	D	.	.	.	.	.	F	N	Q	Y	A	G	V	L	R	M	G	V	E	A	L	K	T	P	K	E	V	V	R	G	Y	A	R	V	Y	R	E	R	A	L	G	M	A	E	A	L	K	G	V	L	S	L	L	P	P	R	A	.	.	T	M
Template Known Secondary structure																						.	.	.	.	.			S													T	S																								T	T	T	S							B	.	.	S	S
Template Predicted Secondary structure																						.	.	.	.	.																																																				.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A	G	W	M	C	D	V	L
Query Conservation
Alig confidence								.																					.	.	.	.																			.	.	.	.	.	.
Template Conservation								.																					.	.	.	.																			.	.	.	.	.	.
Template Sequence		Y	L	W	G	R	L	.	P	E	G	V	D	D	L	E	F	G	L	R	L	V	E	R	G	V	A	L	.	.	.	.	A	P	G	R	G	F	G	P	G	G	K	G	F	V	R	I	A	L	.	.	.	.	.	.	V	R	P	L	E	E	L	L	E	A	A	K	R	I	R	E	A	L
Template Known Secondary structure								.		T	T													T	T				.	.	.	.			G	G	G	G		G	G	G	T	T							.	.	.	.	.	.		S															T
Template Predicted Secondary structure								.																					.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.					340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.							.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions