Job Description P0AFC7 Confidence 99.82% Date Thu Jan 5 11:25:56 GMT 2012 Rank 7 Aligned Residues 162 % Identity 17% Template d1yq9a1 SCOP info HydA/Nqo6-like HydA/Nqo6-like Nickel-iron hydrogenase, small subunit Resolution 2.35

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.																	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query SS confidence																														.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query Sequence		R	K	N	S	I	W	P	Y	N	F	G	L	S	C	C	Y	V	E	M	V	T	S	F	T	A	V	H	D	.	.	.	V	A	R	F	G	A	E	V	L	R	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	Q	A	D	L	M	V	V	A	G	T	C	F	T	K	M	A	.	.	.
Query Conservation																														.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Alig confidence																														.	.	.							.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																																							.
Template Sequence		R	P	S	V	V	Y	L	H	N	A	E	C	T	G	C	S	E	S	V	L	R	T	V	D	P	Y	V	D	E	L	I	L	D	V	I	S	M	.	D	Y	H	E	T	L	M	A	G	A	G	H	A	V	E	E	A	L	H	E	A	I	K	G	D	F	V	C	V	I	E	G	G	I	P	M	G	D	G	G	Y	W
Template Known Secondary structure		S									B			S								T		T	T	T	T								T				.				T	T	T		S	S		T											T	T	S	S							S	B				G	G	G	S	T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
								108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																														.	.	.																	.	.	.	.
Query SS confidence		.	.	.	.	.	.																														.	.	.																	.	.	.	.
Query Sequence		.	.	.	.	.	.	P	V	I	Q	R	L	Y	D	Q	M	L	E	P	K	W	V	I	S	M	G	A	C	A	N	S	G	G	M	Y	.	.	.	D	I	Y	S	V	V	Q	G	V	D	K	F	I	P	V	D	.	.	.	.	V	Y	I	P	G	C	P	P	R	P	E	A	Y	M	Q	A	L	M	L	L	Q	E
Query Conservation		.	.	.	.	.	.																														.	.	.																	.	.	.	.
Alig confidence		.	.	.	.	.	.																														.	.	.																	.	.	.	.
Template Conservation
Template Sequence		G	K	V	G	G	R	N	M	Y	D	I	C	A	E	V	A	P	K	A	K	A	V	I	A	I	G	T	C	A	T	Y	G	G	V	Q	A	A	K	P	N	P	T	G	T	V	G	V	N	E	A	L	G	K	L	G	V	K	A	I	N	I	A	G	C	P	P	N	P	M	N	F	V	G	T	V	V	H	L	L	T
Template Known Secondary structure		S			T	T											G	G	G	S	S														G	G	G	S	T	T		T	T										G	G	G	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	G	K	E	R	R	P	L	S	W	V	V	G	D	Q	G	V	Y	R	A	N	M	Q	S	E	R	E	R	K	R	G	E	R	I	A	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	M	P	E	L	D	K	Q	G	R	P	V	M	F	F	G	E	T	V	H	D	N	C	P	R	L	K	H	F	E	A	G	E	F	A	T	S
Template Known Secondary structure		T		S			B		T	T	S		B					S	S	B	T	G	G	G		T	T							T		B		S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions