Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFC7
Confidence99.90%DateThu Jan 5 11:25:56 GMT 2012
Rank2Aligned Residues162
% Identity20%Templated1frfs_
SCOP infoHydA/Nqo6-like HydA/Nqo6-like Nickel-iron hydrogenase, small subunit
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   50.........60.........70....... ..80......... 90.........100.......
Predicted Secondary structure 














...







..................








.
Query SS confidence 



























. . .











. . . . . . . . . . . . . . . . . .

















.
Query Sequence  RKNSIWPYNFGLSCCYVEMVTSFTAVHD. . . VARFGAEVLRAS. . . . . . . . . . . . . . . . . . PRQADLMVVAGTCFTKMA.
Query Conservation 
  



   
 


 

      
 

... 



      
..................










 

 


.
Alig confidence 



























...





.




..................

















.
Template Conservation 

 
 

    
 

 



    
 
   

  
 
. 
 
 

   
  
   
         








      
Template Sequence  RPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISL. DYQETIMAAAGETSEAALHEALEGKDGYYLVVEGGLPTIDGG
Template Known Secondary structure  S

B

STT
TTTTT
.
TTT
S


SS

SB
Template Predicted Secondary structure 














.






















Template SS confidence 















































































   6...10.........20.........30.........40.. .......50.........60.........70.........80....
 
   108.110.........120.........130...... ...140.........150.... .....160.........170.....
Predicted Secondary structure  ........














...













.






Query SS confidence  . . . . . . . .




























. . .

















.




















Query Sequence  . . . . . . . . PVIQRLYDQMLEPKWVISMGACANSGGMY. . . DIYSVVQGVDKFIPVDVY. IPGCPPRPEAYMQALMLLQES
Query Conservation  ........  
 
 







 


 



  

 
...


 
  


  





.





 




 


 

 
Alig confidence  ........




























...

















.




















Template Conservation             
 
     


 







  


 
   


 
  
   
 
 








 
  
   
  

 
Template Sequence  QWGMVAGHPMIETCKKAAAKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTK
Template Known Secondary structure  TTSTT
STT

STTSTT
TT

TS


SSS

TT
Template Predicted Secondary structure 











































Template SS confidence 















































































   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   176...180.........190.........200.........210..
Predicted Secondary structure 
























Query SS confidence 




































Query Sequence  IGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVT
Query Conservation 
  
 

                  

  
  
 
  
Alig confidence 




































Template Conservation    
 

   

       

  
 
        
   
Template Sequence  GIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPS
Template Known Secondary structure 
S

B
TTS
BSSB
TTTT
B
S
Template Predicted Secondary structure 






























Template SS confidence 




































   165....170.........180.........190.........200.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions