Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFC7
Confidence99.81%DateThu Jan 5 11:25:56 GMT 2012
Rank9Aligned Residues158
% Identity22%Templated1cc1s_
SCOP infoHydA/Nqo6-like HydA/Nqo6-like Nickel-iron hydrogenase, small subunit
Resolution2.15

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   50.........60.........70....... ..80.........90.........100.......
Predicted Secondary structure 














......................
















Query SS confidence 



























. . . . . . . . . . . . . . . . . . . . . .





























Query Sequence  RKNSIWPYNFGLSCCYVEMVTSFTAVHD. . . . . . . . . . . . . . . . . . . . . . VARFGAEVLRASPRQADLMVVAGTCFTKMA
Query Conservation 
  



   
 


 

      
 

...................... 



      











 

 


Alig confidence 



























......................








.



















Template Conservation 
  
 

    
 

 

 
    
 
   

  
 
 


 

   
  
   
    .      








     
Template Sequence  KAPVIWVQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIA. EKFNGNFFLLVEGAIPTAKE
Template Known Secondary structure 
SB

ST
BTTBT
TTT
S

.TTTSSSB
GGG
Template Predicted Secondary structure 



















.













Template SS confidence 















































































   7..10.........20.........30.........40.........50.........60..... ....70.........80.....
 
   108.110.........120.........130...... ...140..... ....150.........160..
Predicted Secondary structure  ................














...






......













Query SS confidence  . . . . . . . . . . . . . . . .




























. . .








. . . . . .
















Query Sequence  . . . . . . . . . . . . . . . . PVIQRLYDQMLEPKWVISMGACANSGGMY. . . DIYSVVQGV. . . . . . DKFIPVDVYIPGCPPRP
Query Conservation  ................  
 
 







 


 



  

 
...


 
  

......
  











 
Alig confidence  ................




























...








......
















Template Conservation 
     
            
 
  
  


 


 



  


 
   


    
             







 
Template Sequence  GRYCIVGEAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHP
Template Known Secondary structure  GTT



SSS

GGGSSS
TGGGSTT

S

T





SS

Template Predicted Secondary structure 
















































Template SS confidence 















































































   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   163......170.... .....180.........190.........200.........210..
Predicted Secondary structure  ...........
























Query SS confidence 











. . . . . . . . . . .





































Query Sequence  EAYMQALMLLQE. . . . . . . . . . . SIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVT
Query Conservation 



 


 

 ...........

  
 

                  

  
  
 
  
Alig confidence 











...........











....





















Template Conservation    
  

  

 
         
 

   

    ....   

  
 
        
   
Template Sequence  DWMVGTLVAAWSHVLNPTEHPLPELDDDGRPLLFF. . . . GDNIHENCPYLDKYDNSEFAET
Template Known Secondary structure  STTTS



B
TTS
B....SSBTTTT
TTTT
B
SS
Template Predicted Secondary structure 


















....





















Template SS confidence 




























































   169170.........180.........190.........200... ......210.........220.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions