Job Description P0AFC7 Confidence 99.82% Date Thu Jan 5 11:25:56 GMT 2012 Rank 8 Aligned Residues 158 % Identity 21% Template c3myrE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.																							.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	N	S	I	W	P	Y	N	F	G	L	S	C	C	Y	V	E	M	V	T	S	F	T	A	V	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	R	F	G	A	E	V	L	R	A	S	P	R	Q	A	D	L	M	V	V	A	G	T	C	F	T	K	M	A
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																																													.
Template Sequence		R	P	S	V	I	W	L	S	F	Q	E	C	T	G	C	T	E	S	L	T	R	A	H	A	P	T	L	E	D	L	I	L	D	F	I	S	L	D	Y	H	H	T	L	Q	A	A	S	G	E	A	A	E	A	A	R	L	Q	A	M	.	D	E	N	R	G	Q	Y	L	V	I	V	D	G	S	I	P	G	P	D	A
Template Known Secondary structure		S									B			S											S	S									T							T	T	T		S	S														.			T	T	T	T							S	B				T	T	S
Template Predicted Secondary structure																																																													.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
												108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																														.	.	.																	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																														.	.	.																	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	P	V	I	Q	R	L	Y	D	Q	M	L	E	P	K	W	V	I	S	M	G	A	C	A	N	S	G	G	M	Y	.	.	.	D	I	Y	S	V	V	Q	G	V	D	K	F	I	P	V	D	.	.	V	Y	I	P	G	C	P	P	R	P	E	A	Y	M	Q	A	L	M	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.																														.	.	.																	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																														.	.	.																	.	.
Template Conservation
Template Sequence		N	P	G	F	S	T	V	A	G	H	S	N	Y	S	I	L	M	E	T	V	E	H	A	A	A	V	I	A	V	G	T	C	A	A	F	G	G	L	P	Q	A	R	P	N	P	T	G	A	M	S	V	M	D	L	V	R	D	K	P	V	I	N	V	P	G	C	P	P	I	P	M	V	I	T	G	V	I	A	H	Y
Template Known Secondary structure			G	G	G	S			T	T												T	T		S													T	G	G	G	S	T	T		T	T											S	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		173	.						.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure				.	.	.	.	.
Query SS confidence				.	.	.	.	.
Query Sequence		Q	E	.	.	.	.	.	S	I	G	K	E	R	R	P	L	S	W	V	V	G	D	Q	G	V	Y	R	A	N	M	Q	S	E	R	E	R	K	R	G	E	R	I	A	V	T
Query Conservation				.	.	.	.	.
Alig confidence				.	.	.	.	.																	.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		L	V	F	G	R	L	P	E	L	D	G	Y	G	R	P	L	A	F	Y	G	Q	S	I	.	.	.	.	H	D	R	C	Y	R	R	P	F	Y	D	K	G	L	F	A	E	S
Template Known Secondary structure					S	S				B		T	T	S		B					S	S	B	G	.	.	.	.	G	G	T		T	T						T	T		B		S	S
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions