Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFC7
Confidence99.86%DateThu Jan 5 11:25:56 GMT 2012
Rank5Aligned Residues122
% Identity20%Templatec1h2aS_
PDB info PDB header:oxidoreductaseChain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   50.........60.........70.........80..... ....90.........100........
Predicted Secondary structure 


















.....................












Query SS confidence 



































. . . . . . . . . . . . . . . . . . . . .






















Query Sequence  RKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEV. . . . . . . . . . . . . . . . . . . . . LRASPRQADLMVVAGTCFTKMAP
Query Conservation 
  



   
 


 

      
 

 



   .....................   











 

 


 
Alig confidence 

































.
.....................






















Template Conservation 

 



    
 

 

 
    
 
   

  .
 
 
 
 

   
      
         








      
Template Sequence  RPSVVYLHNAECTGCSESVLRAFEPYIDTLILDT. LSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANG
Template Known Secondary structure  S

B

STT
TTTTTT.

TTT
S

S
TT

SB
GGGG
Template Predicted Secondary structure 














.




















Template SS confidence 















































































   6...10.........20.........30......... 40.........50.........60.........70.........80....
 
   109 110.........120.........130...... ...140.........150.........160.........170..
Predicted Secondary structure  .........














.......




















Query SS confidence 
. . . . . . . . .


























. . . . . . .



































Query Sequence  V. . . . . . . . . IQRLYDQMLEPKWVISMGACANSGGMY. . . . . . . DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLL
Query Conservation   .........
 
 







 


 



  

 
.......


 
  


  











 




 


 
Alig confidence 
.........


























.......



































Template Conservation             
 
      
  


 



  


 
   


        
       
 





 
  
   
   
Template Sequence  IYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYY
Template Known Secondary structure  TT
TTGGG
SS

GGGSTT
TT

GGGT


B



SS

Template Predicted Secondary structure 
















































Template SS confidence 















































































   85....90.........100.........110.........120.........130.........140.........150.........160....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions