Job Description P33941 Confidence 95.66% Date Wed Jan 25 15:20:50 GMT 2012 Rank 192 Aligned Residues 154 % Identity 15% Template c3lv8A_ PDB info PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp Resolution 1.80 Å

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		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		E	L	L	F	L	I	G	G	N	G	S	G	K	S	T	L	A	M	L	L	T	.	.	.	G	L	Y	Q	P	Q	S	G	E	I	L	L	D	G	K	P	V	S	G	E	Q	P	E	D	Y	R	K	L	F	S	A	V	F	T	D	V	W	L	F	D	Q	L	L	G	P	E	G	K	P	A	N	P	Q	L	V	E
Query Conservation																							.	.	.
Alig confidence																							.	.	.																				.	.
Template Conservation																																													.	.
Template Sequence		K	F	I	V	I	E	G	L	E	G	A	G	K	S	T	A	I	Q	V	V	V	E	T	L	Q	Q	N	G	I	D	H	I	T	R	T	R	E	P	G	G	T	L	L	.	.	A	E	K	L	R	A	L	V	K	E	E	H	P	G	E	E	L	Q	D	I	T	E	L	L	L	V	Y	A	A	R	V	Q	L	V	E
Template Known Secondary structure									S	T	T	S																T	T									S	S		S	S			.	.										S			T	T	S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.									.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.													.	.	480	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	W	L	A	Q	L	K	M	A	H	K	L	E	L	S	N	G	R	.	.	.	.	.	.	.	.	I	V	N	L	K	L	S	K	G	Q	K	K	R	V	A	L	L	L	A	L	A	E	E	R	D	I	I	L	L	D	E	W	A	.	.	.	.	.	.	.	.	.	.	.	.	A	D	Q	D	P	H	F	R	R
Query Conservation																				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	I	K	P	A	L	A	R	G	E	W	V	V	G	D	R	H	D	M	S	S	Q	A	Y	Q	G	G	G	R	Q	I	A	P	S	T	M	Q	S	L	K	Q	T	A	L	G	D	F	K	P	D	L	T	L	Y	L	D	I	D	P	K	L	G	L	E	R	E	L	D	R	I	E	K	M	D	I	S	F	F	E
Template Known Secondary structure			T							T	T							S									T	T	T	T	T																T	T				S																			T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	Y	Q	V	L	L	P	L	M	Q	E	M	G	K	T	I	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	R	E	R	Y	L	E	L	A	N	S	D	D	S	V	V	M	I
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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