Job Description P33941 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 1 Aligned Residues 533 % Identity 18% Template c2yl4A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.				.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.									.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																																								.	.	.	.	.	.	.	.
Query SS confidence										.	.	.																																								.	.	.	.	.	.	.	.
Query Sequence		M	E	L	L	V	L	V	W	.	.	.	R	Q	Y	R	W	P	F	I	S	V	M	A	L	S	L	A	S	A	A	L	G	I	G	L	I	A	F	I	N	Q	R	L	I	E	T	A	D	T	S	.	.	.	.	.	.	.	.	L	L	V	L	P	E	F	L	G	L	L	L	L	L	M	A	V	T	L	G	S	Q
Query Conservation										.	.	.																																								.	.	.	.	.	.	.	.
Alig confidence										.	.	.																																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	E	A	R	K	L	L	G	L	A	Y	P	E	R	R	R	L	A	A	A	V	G	F	L	T	M	S	S	V	I	S	M	S	A	P	F	F	L	G	K	I	I	D	V	I	Y	T	N	P	T	V	D	Y	S	D	N	L	T	R	L	C	L	G	L	S	A	V	F	L	C	G	A	A	A	N	A	I	R	V
Template Known Secondary structure													G	G	G																			T	T																T	T	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		L	A	L	T	T	L	G	H	H	F	V	Y	R	L	R	S	E	F	I	K	R	I	L	D	T	H	V	E	R	I	E	Q	L	G	S	A	S	L	L	A	G	L	T	S	D	V	R	N	I	T	I	A	F	.	V	R	L	P	E	L	V	Q	G	I	I	L	T	I	G	S	A	A	Y	L	W	M	L	S	G	K
Query Conservation																																																							.
Alig confidence																																																							.
Template Conservation
Template Sequence		Y	L	M	Q	T	S	G	Q	R	I	V	N	R	L	R	T	S	L	F	S	S	I	L	R	Q	E	V	A	F	F	D	K	T	R	T	G	E	L	I	N	R	L	S	S	D	T	A	L	L	G	R	S	V	T	E	N	L	S	D	G	L	R	A	G	A	Q	A	S	V	G	I	S	M	M	F	F	V	S	P	N
Template Known Secondary structure																										S								S																				T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		M	L	L	V	T	A	I	W	M	A	I	T	I	W	G	G	F	V	L	V	A	R	V	Y	K	H	M	A	T	L	R	E	T	E	D	K	L	Y	T	D	F	Q	T	V	L	E	G	R	K	E	L	T	L	N	R	E	R	A	E	Y	V	F	N	.	N	L	Y	I	P	D	A	Q	E	Y	R	H	H	I	I	R
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		L	A	T	F	V	L	S	V	V	P	P	V	S	I	I	A	V	I	Y	G	R	Y	L	R	K	L	T	K	V	T	Q	D	S	L	A	Q	A	T	Q	L	A	E	E	R	I	G	N	V	R	T	V	R	A	F	G	K	E	M	T	E	I	E	K	Y	A	S	K	V	D	H	V	M	Q	L	A	R	K	E	A	F
Template Known Secondary structure																																																T							T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	T	F	H	L	S	A	V	N	W	S	N	I	M	M	L	G	A	I	G	L	V	F	W	M	A	N	S	L	G	W	A	D	T	N	V	A	A	T	Y	S	L	T	L	L	F	L	R	T	P	L	L	S	A	V	G	A	L	P	T	L	L	T	A	Q	V	A	F	N	K	L	N	K	F	A	L	A	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	A	G	F	F	G	A	T	G	L	S	G	N	L	I	V	L	S	V	L	Y	K	G	G	L	L	M	G	S	A	H	M	T	V	G	E	L	S	S	F	L	M	Y	A	F	W	V	G	I	S	I	G	G	L	S	S	F	Y	S	E	L	M	K	G	L	G	A	G	G	R	L	W	E	L	L	E	R	E	P
Template Known Secondary structure																															T	T	S																																													T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		308				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure			.	.	.																										.	.
Query SS confidence			.	.	.																										.	.
Query Sequence		K	.	.	.	A	E	F	P	R	P	Q	A	F	P	N	W	Q	T	L	E	L	R	N	V	T	F	A	Y	Q	.	.	D	N	A	F	S	V	G	P	I	N	L	T	I	K	R	G	E	L	L	F	L	I	G	G	N	G	S	G	K	S	T	L	A	M	L	L	T	G	L	Y	Q	P	Q	S	G	E	I	L	L
Query Conservation			.	.	.																										.	.
Alig confidence			.	.	.																										.	.
Template Conservation
Template Sequence		K	L	P	F	N	E	G	V	I	L	N	E	K	S	F	Q	G	A	L	E	F	K	N	V	H	F	A	Y	P	A	R	P	E	V	P	I	F	Q	D	F	S	L	S	I	P	S	G	S	V	T	A	L	V	G	P	S	G	S	G	K	S	T	V	L	S	L	L	L	R	L	Y	D	P	A	S	G	T	I	S	L
Template Known Secondary structure		S	S		S	S		S	B				T	T	T															S	S		T	T	S												T	T									T	T	S	S	S	T							T	T	S	S			S
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420								.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440	.	.	.	.	.	.						.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.																			.									.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.																			.									.	.	.	.	.
Query Sequence		D	G	K	P	V	S	G	E	Q	P	E	D	Y	R	K	L	F	S	A	V	F	T	D	V	W	L	F	D	Q	L	L	G	P	E	G	K	P	A	.	.	.	.	.	.	.	N	P	Q	L	V	E	K	W	L	A	Q	L	K	M	A	H	K	L	.	E	L	S	N	G	R	I	V	.	.	.	.	.	N	L	K
Query Conservation																																								.	.	.	.	.	.	.																			.									.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.																			.									.	.	.	.	.
Template Conservation
Template Sequence		D	G	H	D	I	R	Q	L	N	P	V	W	L	R	S	K	I	G	T	V	S	Q	E	P	I	L	F	S	C	S	I	A	E	N	I	A	Y	G	A	D	D	P	S	S	V	T	A	E	E	I	Q	R	V	A	E	V	A	N	A	V	A	F	I	R	N	F	P	Q	G	F	N	T	V	V	G	E	K	G	V	L
Template Known Secondary structure		T	T			T	T	T	B								S						S	S					S	S	B							T	T	S	S	S	T	T	T	S												T	T							T	S	S	S	G	G	G		B		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	G	Q	K	K	R	V	A	L	L	L	A	L	A	E	E	R	D	I	I	L	L	D	E	W	A	A	D	Q	D	P	H	F	R	R	E	F	Y	Q	V	L	L	P	L	M	Q	E	M	G	K	T	I	F	A	I	S	H	D	D	H	Y	F	I	H	A	D	R	L	L	E	M	R	N	G	Q	L	S	E
Query Conservation
Alig confidence																																																			.	.
Template Conservation																																																			.	.
Template Sequence		L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	L	K	N	P	K	I	L	L	L	D	E	A	T	S	A	L	D	A	E	N	E	Y	L	V	Q	E	A	L	D	R	L	M	D	G	.	.	R	T	V	L	V	I	A	H	R	L	S	T	I	K	N	A	N	M	V	A	V	L	D	Q	G	K	I	T	E
Template Known Secondary structure																					S									S	S																		T	T	.	.	S															S	S							T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.			.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
		530	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	G	E	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	K	H	E	E
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		712	.	.	.	.	.