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Job DescriptionP33941
Confidence100.00%DateWed Jan 25 15:20:50 GMT 2012
Rank51Aligned Residues236
% Identity18%Templatec2ygrD_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:uvrabc system protein a; PDBTitle: mycobacterium tuberculosis uvra
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   300.........310.........320.........330.........340.........350.........360....... ..370.......
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Query Sequence  NKFALAPFKAEFPRPQAFPNWQTLELRNVTFAYQDNAFSVGPINLTIKRGELLFLIGGNGSGKSTLAM. . LLTGLYQPQS
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Template Sequence  AYLSGRESIEIPAIRRSVDPRRQLTVVGAREH. . . . . . NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLN
Template Known Secondary structure  TS





SS




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SSSSSTTSSTTS
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   604.....610.........620.........630..... ....640.........650.........660.........670.......
 
   378.380.........390.........400.......
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Query Sequence  GEILLDGKPVSGEQPEDYRKLFSAVFTDVW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GARQVPGRHTRVTGLDYLD. KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEAC
Template Known Secondary structure 






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GGG

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SSTT
STTSTTT

GGGS
TTSTTTB
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   678.680.........690...... ...700.........710.........720.........730.........740.........750......
 
   408.410.........420.........430.........440...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNG
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Template Sequence  TGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRL
Template Known Secondary structure  TTSS

SSS


TTTTS
SB
T

BTTB
TSBSTT
SS
SSSBT
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   757..760.........770.........780.........790.........800.........810.........820.........830......
 
   444.....450.........460....... ..470.........480.........490.........500.........510.........520
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Query Sequence  RIVNLKLSKGQKKRVALLLALAEE. . . RDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISHDDHYFIHADRLL
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Template Sequence  GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK. GNTVIVIEHNLDVIKTSDWII
Template Known Secondary structure  T

GGGS
SSS


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   837..840.........850.........860.........870.........880.........890.... .....900.........910.....
 
   521. .......530.........540...
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Query Sequence  EM. . . . . . RNGQLSELTGEERDAASRDAV
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Template Sequence  DLGPEGGAGGGTVVAQGTPEDVAAVPASY
Template Known Secondary structure  SSSTTS
S
S
TT
SS
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   916...920.........930.........940....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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