Return to main results Retrieve Phyre Job Id

Job DescriptionP33941
Confidence96.55%DateWed Jan 25 15:20:50 GMT 2012
Rank140Aligned Residues112
% Identity20%Templatec2w58B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:primosome component (helicase loader); PDBTitle: crystal structure of the dnai
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   347..350.........360.........370.........380.........390.........400.........410.........420......
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQPEDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVE
Query Conservation    
    
 
 







   
 
      
 
 
    
           
  
 
   
   

  

         
Alig confidence 





























........................

























Template Conservation       
 
 
  




 

 


  
   ........................                          
Template Sequence  KKMKGLYLHGSFGVGKTYLLAAIANELAKR. . . . . . . . . . . . . . . . . . . . . . . . NVSSLIVYVPELFRELKHSLQDQTMN
Template Known Secondary structure 




SSSSSS........................S


TTT
SSST
Template Predicted Secondary structure 










........................





Template SS confidence 















































































   11591160.........1170.........1180........ .1190.........1200.........1210....
 
   427..430.........440.........450.........460.........470.........480.........490.........500......
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  KWLAQLKMAHKLELSNGRIVNLKLSKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAI
Query Conservation    
                    




 


 




     





 

 

      
   
         


 
Alig confidence 




.................................









































Template Conservation       .................................     





 
           
  

  
       


Template Sequence  EKLDY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IKKVPVLMLDDLGAEASSWVRDDVFGPILQYRMFENLPTFFT
Template Known Secondary structure  .................................
SS
SS

TTT

Template Predicted Secondary structure  .................................














Template SS confidence 















































































   1215.... 1220.........1230.........1240.........1250.........1260.
 
   507 ..510.....
Predicted Secondary structure 
.

Query SS confidence 
.







Query Sequence  S. HDDHYFIH
Query Conservation 
.
       
Alig confidence 
.







Template Conservation 

     
  
Template Sequence  SNFDMQQLAH
Template Known Secondary structure  SS
Template Predicted Secondary structure 



Template SS confidence 









   1263......1270..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions