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Job DescriptionP33941
Confidence99.96%DateWed Jan 25 15:20:50 GMT 2012
Rank59Aligned Residues195
% Identity19%Templatec2vf7B_
PDB info PDB header:dna-binding proteinChain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   339340.........350.........360....... ..370.........380.........390.........400.......
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Query Sequence  VGPINLTIKRGELLFLIGGNGSGKSTLAM. . . . . LLTGLYQPQSGEILLDGKPVSGEQPEDYRKLFSAVFTDVW. . . . . .
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Template Sequence  LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQGSARLGGDLAQITR. . . . . . . . . LVRVDQKPIGRTPRS
Template Known Secondary structure  SSSTTSSTTS



SSGGG

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   513......520.........530.........540.........550.........560........ .570.........580...
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVPSVYAPCPVCHGTRYNAETLEVEYRGKN
Template Known Secondary structure 
TTTTSSTS


TTSS
SSSSSSB
SSSTT






TTTSSS
B
TTGGG

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   601........610.........620.........630.........640.........650.........660.........670.........680
 
   408.410.........420.........430.........440.........450.........460......... 470.........480.
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Query Sequence  . . . LFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNGRIVNLKLSKGQKKRVALLLALAEERD. . . IILLDEWAADQD
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Template Sequence  IADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLH
Template Known Secondary structure  T
BTTT
T
TTSBTT

GGG

SSSSS

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   686...690.........700.........710.........720.........730.........740.........750.........760.....
 
   482.......490.........500.........510.........520.. .......530.........540...
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Query Sequence  PHFRREFYQVLLPLMQEMGKTIFAISHDDHYFIHADRLLEM. . . . . . RNGQLSELTGEERDAASRDAV
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Template Sequence  PADVERLQRQLVKLVDA. GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSV
Template Known Secondary structure  T.T



TT
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   766...770.........780.. .......790.........800.........810.........820.........830..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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