Job Description P33941 Confidence 97.99% Date Wed Jan 25 15:20:50 GMT 2012 Rank 91 Aligned Residues 191 % Identity 17% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.					.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																									.	.														.													.	.	.	.
Query SS confidence																																									.	.														.													.	.	.	.
Query Sequence		T	L	L	F	L	R	T	P	L	L	S	A	V	G	A	L	P	T	L	L	T	A	Q	V	A	F	N	K	L	N	K	F	A	L	A	P	F	K	A	.	.	E	F	P	R	P	Q	A	F	P	N	W	Q	T	.	L	E	L	R	N	V	T	F	A	Y	Q	D	.	.	.	.	N	A	F	S	V	G	P	I	N
Query Conservation																																									.	.														.													.	.	.	.
Alig confidence																																									.	.														.													.	.	.	.
Template Conservation
Template Sequence		I	V	K	E	I	V	N	I	S	S	G	Y	V	E	P	M	Q	T	L	N	D	V	L	A	Q	L	D	A	V	V	S	F	A	H	V	S	N	G	A	P	V	P	Y	V	R	P	A	I	L	E	K	G	Q	G	R	I	I	L	K	A	S	R	H	A	C	V	E	V	Q	D	E	I	A	F	I	P	N	D	V	Y
Template Known Secondary structure											G	G	G																											S	S	S			B							T	T		S										T	T	T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		L	T	I	K	R	G	E	L	L	F	L	I	G	G	N	G	S	G	K	S	T	L	A	M	L	L	T	G	L	Y	Q	P	Q	S	G	E	I	L	L	D	G	K	P	V	S	G	E	Q	P	E	D	Y	R	K	L	F	S	.	A	V	F	T	D	V	W	L	F	D	Q	L	L	G	P	E	G	K	P	A	N	P
Query Conservation																																																											.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	V	L	M	A	Q	I	G	C	F	V	P	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	S	S								S	T	T	S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T			B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.																						.	.	.	.	.	.	690	.	.	.	.	.	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.			.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																												.	.																																	.
Query SS confidence																																												.	.																																	.
Query Sequence		Q	L	V	E	K	W	L	A	Q	L	K	M	A	H	K	L	E	L	S	N	G	R	I	V	N	L	K	L	S	K	G	Q	K	K	R	V	A	L	L	L	A	L	.	.	A	E	E	R	D	I	I	L	L	D	E	W	A	A	D	Q	D	P	H	F	R	R	E	F	Y	Q	V	L	L	P	L	M	.	Q	E	M
Query Conservation																																												.	.																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																	.															.	.																																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	S	A	E	V	S	I	V	D	C	I	L	A	R	V	G	.	S	T	F	M	A	E	M	L	E	T	A	S	I	L	R	S	A	T	K	D	S	L	I	I	I	D	E	L	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S								S								.															T	T			T	T	S						S				S	S																			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
													698	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.		.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.
		500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	I	F	A	I	S	H	D	D	H	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	F	C	M	F	A	T	H	F	H	E	L
Template Known Secondary structure												T	T	S
Template Predicted Secondary structure
Template SS confidence
		775	.	.	.	.	780	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions