Return to main results Retrieve Phyre Job Id

Job DescriptionP33941
Confidence93.32%DateWed Jan 25 15:20:50 GMT 2012
Rank374Aligned Residues123
% Identity25%Templatec2iy3A_
PDB info PDB header:rna-bindingChain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
Resolution16.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   347..350.........360.........370.........380.........390.........400.........410.........420......
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQPEDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVE
Query Conservation    
    
 
 







   
 
      
 
 
    
           
  
 
   
   

  

         
Alig confidence 










































.........





....................

Template Conservation    
 





  
 




 



      
 

 

 


 
......... 

 

....................
 
Template Sequence  KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR. . . . . . . . . PAAREQ. . . . . . . . . . . . . . . . . . . . LR
Template Known Secondary structure 
SS


TTSSTT



SS
.............................
Template Predicted Secondary structure 


















.........
....................
Template SS confidence 















































































   96...100.........110.........120.........130........ .140.... ..
 
   427..430.........440.........450.........460.........470....... ..480.........490.........500.....
Predicted Secondary structure 























.






Query SS confidence 


















































.



























Query Sequence  KWLAQLKMAHKLELSNGRIVNLKLSKGQKKRVALLLALAEERDIILLDEWA. ADQDPHFRREFYQVLLPLMQEMGKTIFA
Query Conservation    
                    




 


 




     





 
.
 

      
   
         


 
Alig confidence 
















.......


























.

















..







Template Conservation    
   


        .......

  
    
  
     









   
  

 

  
    .. 
 




Template Sequence  LLGEKVGVPVLEVMDGE. . . . . . . SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL. . GPDEVLLV
Template Known Secondary structure  T



TT
.......
T
S



SS

..

S
Template Predicted Secondary structure 







.......














..


Template SS confidence 















































































   147..150.........160... ......170.........180.........190.........200......... 210.......
 
   506.
Predicted Secondary structure 
Query SS confidence 

Query Sequence  IS
Query Conservation 

Alig confidence 

Template Conservation 

Template Sequence  LD
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 

   218.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions