Job Description P33941 Confidence 94.93% Date Wed Jan 25 15:20:50 GMT 2012 Rank 253 Aligned Residues 123 % Identity 24% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	G	E	L	L	F	L	I	G	G	N	G	S	G	K	S	T	L	A	M	L	L	T	G	L	Y	Q	P	Q	S	G	E	I	L	L	D	G	K	P	V	S	G	E	Q	P	E	D	Y	R	K	L	F	S	A	V	F	T	D	V	W	L	F	D	Q	L	L	G	P	E	G	K	P	A	N	P	Q	L	V	E
Query Conservation
Alig confidence																														.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation																														.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	.	K	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	V	G	L	V	A	A	D	V	Y	.	.	.	.	.	.	.	.	.	.	R	P	A	A	Y	D	Q	L	L
Template Known Secondary structure		S	S	S								S	S	S	S	S	S	T	T	T										.	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B						S	.	.	.	.	.	.	.	.	.	.	S	S		S
Template Predicted Secondary structure																														.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.																			.	.	.	.	.	130	.	.	.	.	.											.	.	.	.	140	.	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.	490	.	.	.	.	.	.	.			.	.	500	.	.	.
Predicted Secondary structure																																																										.																.	.
Query SS confidence																																																										.																.	.
Query Sequence		K	W	L	A	Q	L	K	M	A	H	K	L	E	L	S	N	G	R	I	V	N	L	K	L	S	K	G	Q	K	K	R	V	A	L	L	L	A	L	A	E	E	R	D	I	I	L	L	D	E	W	A	A	D	Q	D	P	.	H	F	R	R	E	F	Y	Q	V	L	L	P	L	M	Q	.	.	E	M	G	K	T	I
Query Conservation																																																										.																.	.
Alig confidence																			.	.	.	.	.	.	.																									.	.							.																.	.
Template Conservation																			.	.	.	.	.	.	.																									.	.
Template Sequence		Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	.	.	.	.	.	.	.	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	.	.	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I
Template Known Secondary structure							T	T							S	S			.	.	.	.	.	.	.		T	T													T	T		S						.	.				S			S	S	T																		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.																									.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.								.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		504	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	I	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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