Return to main results Retrieve Phyre Job Id

Job DescriptionP33941
Confidence98.01%DateWed Jan 25 15:20:50 GMT 2012
Rank90Aligned Residues199
% Identity18%Templatec1ewqA_
PDB info PDB header:replication/dnaChain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   269270.........280.........290.........300.........310.........320.........330.........340........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  SLTLLFLRTPLLSAVGALPTLLTAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFAYQDNAFSVGPINLTIKR
Query Conservation               
               

                       
   


  
     

  
 
 
  
Alig confidence 






























































.












...
Template Conservation        
          
      

 

 
 


  
       
     
 
   


 

.     




   ...
Template Sequence  EEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRFGDRLQIRAGRHPVVE. RRTEFVPNDLEXA. . .
Template Known Secondary structure  TTT
B

SSS

TTGG.GTS



S...
Template Predicted Secondary structure 

















.




...
Template SS confidence 















































































   500.........510.........520.........530.........540.........550.........560.. .......570.....
 
   349350.........360.........370.........380.........390.........400 .........410.........420.......
Predicted Secondary structure 























.
















Query SS confidence 



















































.


























Query Sequence  GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQPEDYRKLFS. AVFTDVWLFDQLLGPEGKPANPQLVEK
Query Conservation 
    
 
 







   
 
      
 
 
    
           
 . 
 
   
   

  

          
Alig confidence 





















.....................








.


........................
Template Conservation      











 

 

.....................
  





  

........................
Template Sequence  HELVLITGPNXAGKSTFLRQTA. . . . . . . . . . . . . . . . . . . . . LIALLAQVGSFVP. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
S
SSSS.....................TTT

BS........................
Template Predicted Secondary structure 







.....................




........................
Template SS confidence 















































































   576...580.........590....... ..600.........610
 
   428.430.........440.........450.........460.........470.........480.........490.........500.......
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  WLAQLKMAHKLELSNGRIVNLKLSKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAIS
Query Conservation   
                    




 


 




     





 

 

      
   
         


 

Alig confidence  .














































































Template Conservation  .
  
 
   
 







 


  

 
   

  

  













 

 


 



 
       



Template Sequence  . AEEAHLPLFDGIYTRIGAGKSTFXVEXEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFAT
Template Known Secondary structure  .SS


S




S

TTSTTTTS
T

Template Predicted Secondary structure  .































Template SS confidence 















































































   611........620.........630.........640.........650.........660.........670.........680.........
 
   508.510.......
Predicted Secondary structure 



Query SS confidence 









Query Sequence  HDDHYFIHAD
Query Conservation 
        
Alig confidence 









Template Conservation 
  

  
  
Template Sequence  HYFELTALGL
Template Known Secondary structure 

T


Template Predicted Secondary structure 



Template SS confidence 









   696...700.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions