Job Description P39172 Confidence 95.58% Date Thu Jan 5 11:58:20 GMT 2012 Rank 18 Aligned Residues 183 % Identity 15% Template c3pdiB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen Resolution 2.40 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	S	D	V	K	R	L	Q	N	A	D	L	V	V	W	V	G	P	E	M	E	A	F	M	Q	K	P	V	S	K	L	P	G	A	K	Q	V	T	I	A	Q	L	E	D	V	K	P	L	L	M	K	S	I	H	G	D	D	D	D	H	D	H	A	E	K	S	D	E	D	H	H	H	G	D	F	N	M	H	L
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	A	E	L	A	T	A	G	Q	S	V	A	T	L	V	V	G	Q	S	L	A	G	A	A	D	A	L	A	E	R	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	D	R
Template Known Secondary structure							G	G	G	S	S		S						S	G	G	G											S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.																																												260	.	.	.
		145					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.						.	210	.	.	.	.	.
Predicted Secondary structure			.	.	.	.																																																																.	.	.	.	.
Query SS confidence			.	.	.	.																																																																.	.	.	.	.
Query Sequence		W	.	.	.	.	L	S	P	E	I	A	R	A	T	A	V	A	I	H	G	K	L	V	E	L	M	P	Q	S	R	A	K	L	D	A	N	L	K	D	F	E	A	Q	L	A	S	T	E	T	Q	V	G	N	E	L	A	P	L	K	G	K	G	Y	F	V	F	H	D	.	.	.	.	.	A	Y	G	Y	F	E	K
Query Conservation			.	.	.	.																																																																.	.	.	.	.
Alig confidence			.	.	.	.																																											.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	G	M	L	Y	G	L	D	A	V	D	A	W	L	M	A	L	A	E	I	S	G	N	P	V	P	D	R	Y	K	R	Q	R	A	Q	L	Q	D	A	M	L	D	T	H	F	M	.	.	.	.	.	.	.	.	.	.	L	S	S	A	R	T	A	I	A	A	D	P	D	L	L	L	G	F	D	A	L	L	R
Template Known Secondary structure						S																		S	S																								.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310											.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.									.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																			.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Query Sequence		Q	F	G	L	T	P	L	G	H	F	T	V	N	P	E	I	Q	.	.	.	.	.	.	.	.	P	G	A	Q	R	L	H	E	I	R	T	Q	L	V	E	Q	K	A	T	C	V	F	A	E	P	Q	F	R	P	A	V	V	E	S	V	A	R	G	T	S	V	R	M	G	T	L	D	P	.	.	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.																											.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.
Template Sequence		S	M	G	A	H	T	V	A	A	V	V	P	A	R	A	A	A	L	V	D	S	P	L	P	S	V	R	V	G	D	L	E	D	L	E	H	A	A	R	A	G	Q	A	Q	L	V	I	G	N	S	H	.	.	.	.	.	A	L	A	S	A	R	R	L	G	V	P	L	L	R	A	G	F	P	Q	Y	D	L	L	G
Template Known Secondary structure		T	T	T									S	S			S			T	T	T	T	S	S					S													T		S						T	T	.	.	.	.	.								T	T							S	S			T	T		T	T
Template Predicted Secondary structure																																																					.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.						.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	T	N	I	K	L	G	K	T	S	Y	S	E	F	L	S	Q	L	A	N	Q	Y	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	Q	R	C	W	S	G	Y	R	G	S	S	Q	V	L	F	D	L	A	N	L	L	V	E
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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