Job Description P39172 Confidence 63.01% Date Thu Jan 5 11:58:20 GMT 2012 Rank 37 Aligned Residues 208 % Identity 11% Template c3aerC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark Resolution 2.80 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	F	I	A	S	A	I	A	D	G	V	T	E	T	E	V	L	L	P	D	G	A	S	E	H	D	Y	S	L	R	P	S	D	V	K	R	L	Q	N	A	D	L	V	V	W	V	G	P	E	M	E	A	F	M	Q	K	P	V	S	K	L	P	G	A	K	Q	V	T	I	A	Q	L	E	D	V	K	P	L	L
Query Conservation
Alig confidence											.	.	.											.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Conservation											.	.	.											.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Sequence		C	L	S	L	L	T	Q	L	G	.	.	.	V	G	P	V	R	M	L	P	A	R	.	.	.	.	.	.	.	.	R	S	D	I	E	P	A	V	G	P	N	T	R	F	I	L	A	Q	P	F	L	G	E	T	T	G	A	L	E	R	R	G	A	K	R	I	A	A	P	F	P	F	G	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	.	.	.			S					S		S	.	.	.	.	.	.	.	.	S	G	G	G				B		T	T						S	S	T	T										T	T	T									S			.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.											.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	S	I	H	G	D	D	D	D	H	D	H	A	E	K	S	D	E	D	H	H	H	G	D	F	N	M	H	L	W	L	S	P	E	I	A	R	A	T	A	V	A	I	H	G	K	L	V	E	L	M	P	Q	S	R	A	K	L	D	A	N	L	K	D	F	E	A	Q	L	A	S	T	E	T	Q	V	G	N	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	G	T	T	L	W	L	K	A	V	A	D	A	Y	G	V	S	A	E	K	F	E	A	V	T	A	A	P	R	A	R	A	K	K	A	I	A	A	H	L	E	T	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	T																												.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Template SS confidence
																																			249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.																240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	P	L	K	G	K	G	Y	F	V	F	H	D	A	Y	.	.	.	.	.	.	G	Y	F	E	K	Q	F	G	L	T	P	L	G	H	F	T	V	N	P	E	I	Q	P	G	A	Q	R	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	R	T	Q	L	V	E	Q	K	A	T	C	V
Query Conservation																		.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.														.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	T	G	K	S	L	F	M	F	P	D	S	Q	L	E	I	P	L	A	R	F	L	A	R	E	C	G	M	K	T	T	E	I	A	T	P	F	L	H	K	A	I	M	A	P	D	L	A	L	L	P	S	N	T	A	L	T	E	G	Q	D	L	E	A	Q	L	D	R	H	E	A	I	N	P	D	L	T
Template Known Secondary structure		.	.	.		T	T								S	S	S												T	T										S				T	T	T	T					T	T	S		T	T																						S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	E	P	Q	F	R	P	A	V	V	E	S	V	A	R	G	T	S	V	R	M	G	T	L	D	P	L	G	T	N	I	K	L	G	K	T	S	Y	S	E	F	L	S	Q	L	A	N	Q	Y	A	S
Query Conservation
Alig confidence						.	.	.	.	.
Template Conservation						.	.	.	.	.
Template Sequence		V	C	G	L	.	.	.	.	.	G	L	A	N	P	L	E	A	K	G	H	A	T	K	W	A	I	E	L	V	F	T	P	V	H	F	Y	E	Q	A	G	D	L	A	G	L	F	S	R	P	L	R	R
Template Known Secondary structure						.	.	.	.	.								T	T	T						S	G	G	G	G	T	S			S	S	G	G	G
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		369	370	.	.						.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions