Job Description P39172 Confidence 92.73% Date Thu Jan 5 11:58:20 GMT 2012 Rank 21 Aligned Residues 208 % Identity 17% Template c3aerB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark Resolution 2.80 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	F	I	A	S	A	I	A	D	G	V	T	E	T	E	V	L	L	P	D	G	A	S	E	H	D	Y	S	L	R	P	S	D	V	K	R	L	Q	N	A	D	L	V	V	W	V	G	P	E	M	E	A	F	M	Q	K	P	V	S	K	L	P	G	A	K	Q	V	T	I	A	Q	L	E	D	V	K	P	L	L
Query Conservation
Alig confidence											.	.	.														.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation											.	.	.														.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Sequence		V	T	K	L	L	A	T	M	G	.	.	.	I	K	V	N	V	C	A	P	L	G	A	S	P	.	.	.	.	.	.	.	D	D	L	R	K	L	G	Q	A	H	F	N	V	L	M	Y	P	E	T	G	E	S	A	A	R	H	L	E	R	A	C	K	Q	P	F	T	K	I	V	P	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	T	.	.	.									T	T				.	.	.	.	.	.	.				T	T	G	G	G	S	S																									B						.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.														.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.								.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	S	I	H	G	D	D	D	D	H	D	H	A	E	K	S	D	E	D	H	H	H	G	D	F	N	M	H	L	W	L	S	P	E	I	A	R	A	T	A	V	A	I	H	G	K	L	V	E	L	M	P	Q	S	R	A	K	L	D	A	N	L	K	D	F	E	A	Q	L	A	S	T	E	T	Q	V	G	N	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	V	G	A	T	R	D	F	L	A	E	V	S	K	I	T	G	L	P	V	V	T	D	E	S	T	L	R	Q	P	W	W	S	A	S	V	D	S	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S																								T	T									S	G	G	G	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230															.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	P	L	K	G	K	G	Y	F	V	F	H	D	A	Y	G	.	.	.	.	.	.	Y	F	E	K	Q	F	G	L	T	P	L	G	H	F	T	V	N	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	P	G	A	Q	R	L	H	E	I	R	T	Q	L	V	E	Q	K	A	T	C	V	F
Query Conservation																			.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	T	Y	L	T	G	K	R	V	F	I	F	G	D	G	T	H	V	I	A	A	A	R	I	A	A	K	E	V	G	F	E	V	V	G	M	G	C	Y	N	R	E	M	A	R	P	L	R	T	A	A	A	E	Y	G	L	E	A	L	I	T	D	D	Y	L	E	V	E	K	A	I	E	A	A	A	P	E	L	I	L
Template Known Secondary structure		.	G	G	G	T	T							S	S														T	T										S		G	G	G										T	T	T							S															S
Template Predicted Secondary structure		.
Template SS confidence
			276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.									.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.
Query Sequence		A	E	P	Q	F	R	P	A	V	V	E	S	V	A	R	G	T	S	V	R	M	G	T	L	.	.	.	.	.	.	.	.	D	P	L	G	T	N	I	K	L	G	K	T	S	Y	S	E	F	L	S	Q	L	A	N	Q	Y	A	S	C	L
Query Conservation																										.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		G	.	.	.	.	.	T	Q	M	E	R	N	I	A	K	K	L	G	L	P	C	A	V	I	S	A	P	V	H	V	Q	D	F	P	A	R	Y	A	P	Q	M	G	F	E	G	A	N	V	L	F	D	T	W	V	H	P	L	V	M	G	L
Template Known Secondary structure			.	.	.	.	.											T	T							S		S			S	T	T	S		S	S				S	S
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		355						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions