Job Description P39172 Confidence 96.18% Date Thu Jan 5 11:58:20 GMT 2012 Rank 15 Aligned Residues 217 % Identity 17% Template c2xdqB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex Resolution 2.40 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	F	I	A	S	A	I	A	D	G	V	T	E	T	E	V	L	L	P	D	G	A	S	E	H	D	Y	S	L	R	P	S	D	V	K	R	L	Q	N	A	D	L	V	V	W	V	G	P	E	M	E	A	F	M	Q	K	P	V	S	K	L	P	G	A	K	Q	V	T	I	A	Q	L	E	D	V	K	P	L	L
Query Conservation
Alig confidence											.	.	.														.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation											.	.	.														.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Sequence		L	K	Q	L	M	A	D	L	G	.	.	.	I	Q	V	N	L	V	I	P	A	A	A	T	V	.	.	.	.	.	.	.	H	D	L	Q	R	L	P	Q	A	W	F	N	L	V	P	Y	R	E	I	G	G	L	T	A	Q	Y	L	E	R	E	F	G	Q	P	S	V	R	I	T	P	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	.	.	.									T	T			T	.	.	.	.	.	.	.	T	T	G	G	G	G	G	G	S	S							T	T	S	S																					.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.														.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.								.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		M	K	S	I	H	G	D	D	D	D	H	D	H	A	E	K	S	D	E	D	H	H	H	G	D	F	N	M	H	L	W	L	S	P	E	I	A	R	A	T	A	V	A	I	H	G	K	L	V	E	L	M	P	.	.	Q	S	R	A	K	L	D	A	N	L	K	D	F	E	A	Q	L	A	S	T	E	T	Q	V	G
Query Conservation																																																							.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	V	V	E	T	A	R	C	I	R	A	I	Q	G	V	L	N	A	Q	G	A	G	V	N	Y	E	A	F	I	E	Q	Q	T	R	E	V	S	Q	A	A	W	F	S	R	S	I	D	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S																	T	T	T																T									S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																	247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.															.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																					.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	L	A	P	L	K	G	K	G	Y	F	V	F	H	D	A	Y	G	.	.	.	.	.	.	Y	F	E	K	Q	F	G	L	T	P	L	G	H	F	T	V	N	P	E	I	Q	P	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	L	H	E	I	R	T	Q	L	V	E	Q	K	A	T	C
Query Conservation																					.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.															.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		Q	N	.	.	.	L	T	G	K	K	A	V	V	F	G	D	N	T	H	A	A	A	M	T	K	I	L	S	R	E	M	G	I	H	V	V	W	A	G	T	Y	C	K	Y	D	A	D	W	F	R	A	E	V	A	G	F	C	D	E	V	L	I	T	D	D	H	T	V	V	G	D	A	I	A	R	V	E	P	A	A
Template Known Secondary structure			T	.	.	.	T	T	T																																	S		G	G	G									T	T	T	S	S																					S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		296	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.									.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.
Query Sequence		V	F	A	E	P	Q	F	R	P	A	V	V	E	S	V	A	R	G	T	S	V	R	M	G	T	L	.	.	.	.	.	.	.	.	D	P	L	G	T	N	I	K	L	G	K	T	S	Y	S	E	F	L	S	Q	L	A	N	Q	Y	A	S	C	L	K
Query Conservation																												.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.
Template Sequence		I	F	.	.	.	.	.	G	T	Q	M	E	R	H	V	G	K	R	L	N	I	P	C	G	V	I	A	A	P	I	H	I	Q	D	F	P	V	G	Y	R	P	F	L	G	Y	E	G	T	N	Q	L	V	D	L	I	Y	N	S	F	T	L	G	M	E
Template Known Secondary structure				.	.	.	.	.													T							S	S	S			G	G	G	S		S	S				S	S
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		373	.						.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions