Job Description P39172 Confidence 35.31% Date Thu Jan 5 11:58:20 GMT 2012 Rank 81 Aligned Residues 54 % Identity 24% Template c2k6xA_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure Resolution UNK

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		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		A	S	T	E	T	Q	V	G	N	E	L	A	P	L	K	G	K	G	Y	F	V	F	H	D	A	Y	G	Y	F	E	K	Q	F	G	L	T	P	L	G	H	F	T	V	N	P	E	.	.	I	Q	P	G	A	Q	R	L	H	E	I	R	T	Q	L	V	E	Q	K	A	T	C	V
Query Conservation																																																.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	I	E	R	R	I	K	K	L	I	S	L	G	K	K	K	G	Y	I	T	Y	E	D	I	D	K	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	D	F	E	G	F	D	T	N	L	I	E	R	I	H	E	E	L	E	K	H	G	I	N	I	V
Template Known Secondary structure																			S	S		B									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S		S	S																T					B
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions